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Clc11G07820 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07820
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationClcChr11:7772019..7773833
RNA-Seq ExpressionClc11G07820
SyntenyClc11G07820
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0006952 - defense response (biological process)
GO:0009607 - response to biotic stimulus (biological process)
GO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0015078 - proton transmembrane transporter activity (molecular function)
GO:0008289 - lipid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR038662 - F1F0 ATP synthase subunit C superfamily
IPR035921 - F/V-ATP synthase subunit C superfamily
IPR020537 - ATP synthase, F0 complex, subunit C, DCCD-binding site
IPR007081 - RNA polymerase Rpb1, domain 5
IPR002379 - V-ATPase proteolipid subunit C-like domain
IPR000454 - ATP synthase, F0 complex, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB9092652.1 hypothetical protein FH972_026963 [Carpinus fangiana]2.5e-2184.51Show/hide
Query:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        P + +   G+  EDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFA MMA
Subjt:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

KAF3452179.1 hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]2.7e-2391.3Show/hide
Query:  LSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        +SLSLLGNHEEDSRTGLSGRGAAVGIGNV SSLIHSVARNPSLAKQSFGYAILGFALTEAIA FA   A
Subjt:  LSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

KAF4349909.1 hypothetical protein G4B88_002331 [Cannabis sativa]8.4e-3380.85Show/hide
Query:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM
        R+ ++ +H  GSPR THTNPTLLS I+SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQ FGYAI GFALTEAIA+  P++
Subjt:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM

QWQ49909.1 ATPase subunit 9 [Zelkova schneideriana]8.7e-2275.56Show/hide
Query:  LSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA---GQIRKKQVKLTRSIRTTSFL
        +SLLGNHEEDSRTGLSGR   VGIGNVFSSLIHSVARNPSLAKQ FGYAILGFALTEAIA FAPMMA     I + +V+++  I TT FL
Subjt:  LSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA---GQIRKKQVKLTRSIRTTSFL

WP_131796660.1 ATP synthase subunit C family protein [Candidatus Frankia datiscae]2.4e-2491.43Show/hide
Query:  SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMAGQ
        SLSLLGNHEEDSRTGLSGRGAA GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A +
Subjt:  SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMAGQ

TrEMBL top hitse value%identityAlignment
A0A2S1U693 DNA-directed RNA polymerase subunit beta''4.4e-1960.19Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGN-HEEDSRTG---LSGRG
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+PR    +P   T+   +   +L+G    +D  TG   ++ R 
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGN-HEEDSRTG---LSGRG

Query:  AAVGIGNV
          VGIG V
Subjt:  AAVGIGNV

A0A445C9K0 DNA-directed RNA polymerase subunit9.7e-1978.26Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSL
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV     TH N   LS  + +
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSL

A0A5N6L5T5 ATP-synt_C domain-containing protein1.2e-2184.51Show/hide
Query:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        P + +   G+  EDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFA MMA
Subjt:  PILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

A0A7J6DWT2 ATP-synt_C domain-containing protein4.1e-3380.85Show/hide
Query:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM
        R+ ++ +H  GSPR THTNPTLLS I+SLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQ FGYAI GFALTEAIA+  P++
Subjt:  RLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMM

A9XWC9 DNA-directed RNA polymerase (Fragment)4.4e-1961.54Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP-TLLSPILSLSLLGNHEEDS----RTGLSGRGAA
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRT+DAGYLTRRLVEVVQHIV      G+ RA   +P T+ + ILS +L+G    DS       ++ R   
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP-TLLSPILSLSLLGNHEEDS----RTGLSGRGAA

Query:  VGIG
        +GIG
Subjt:  VGIG

SwissProt top hitse value%identityAlignment
Q0G9M9 DNA-directed RNA polymerase subunit beta''2.9e-2059.81Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNPT--LLSPILSLSLLGN-HEEDSRTGL---SGRGA
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P   +   IL  +L+G    +D   GL   + R  
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNPT--LLSPILSLSLLGN-HEEDSRTGL---SGRGA

Query:  AVGIGNV
         +GIG V
Subjt:  AVGIGNV

Q2L8Z5 DNA-directed RNA polymerase subunit beta''2.9e-2069.51Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLG
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P   TL   I   +L+G
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLG

Q2MIB0 DNA-directed RNA polymerase subunit beta''1.0e-2058.33Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----SRTGLSGRG
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P    +   I S +L+G    D        ++ R 
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----SRTGLSGRG

Query:  AAVGIGNV
         A+GIG V
Subjt:  AAVGIGNV

Q2MIJ7 DNA-directed RNA polymerase subunit beta''1.0e-2058.33Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----SRTGLSGRG
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P    +   I S +L+G    D        ++ R 
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----SRTGLSGRG

Query:  AAVGIGNV
         A+GIG V
Subjt:  AAVGIGNV

Q2VEI6 DNA-directed RNA polymerase subunit beta''1.0e-2058.33Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----SRTGLSGRG
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV      G+ R    +P    +   I S +L+G    D        ++ R 
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV------GSPRATHTNP---TLLSPILSLSLLGNHEED----SRTGLSGRG

Query:  AAVGIGNV
         A+GIG V
Subjt:  AAVGIGNV

Arabidopsis top hitse value%identityAlignment
AT2G07671.1 ATP synthase subunit C family protein1.1e-1990.57Show/hide
Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA

AT4G35800.1 RNA polymerase II large subunit3.2e-0640.74Show/hide
Query:  SRRLVQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
        SR  V+++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+
Subjt:  SRRLVQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV

ATCG00170.1 DNA-directed RNA polymerase family protein4.6e-2198Show/hide
Query:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
        +QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV
Subjt:  VQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIV

ATMG00040.1 ATP synthase subunit C family protein7.1e-0682.14Show/hide
Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLA
        ++  GAA+GIGNVFSSLIHSVARNPSLA
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLA

ATMG01080.1 mitochondrial F0-ATPase subunit 91.1e-1990.57Show/hide
Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGTTGTTAGGACTGATCAACCATTGCGTAAAGCCTTGCAACGACCTGAAACATCAAGGAGATTGGTGCAAAG
CAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACAC
GCAGACTTGTTGAAGTAGTTCAACACATTGTTGGTAGCCCGCGCGCGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTCTTTGTCACTTCTTGGAAATCACGAA
GAGGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGTTTTCAGTTCATTAATTCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATC
ATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCGGTCAAATCAGGAAGAAACAAGTCAAATTGACCCGTTCCATTC
GCACCACAAGCTTTTTGCCGGATCAGCATCCAATATTCAAAGTTTCGGCTCTTCCTGTGCCTGAATTACTACAGCGCCTTACCGTCTGGTCTTCATTGGTATTTGCTTTT
TGCTCACCCACTACGTTTTTTTTTTCGTTTTTCCCCCGCCCGGTCGAGCTGTCTGAGGTCGATGGTGCATCCGGTAAGCTCTTTCGGTATTCATCTCCAGAGCCCGCCCG
GATCACCAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGTTGTTAGGACTGATCAACCATTGCGTAAAGCCTTGCAACGACCTGAAACATCAAGGAGATTGGTGCAAAG
CAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACAC
GCAGACTTGTTGAAGTAGTTCAACACATTGTTGGTAGCCCGCGCGCGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTCTTTGTCACTTCTTGGAAATCACGAA
GAGGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGTTTTCAGTTCATTAATTCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATC
ATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCGGTCAAATCAGGAAGAAACAAGTCAAATTGACCCGTTCCATTC
GCACCACAAGCTTTTTGCCGGATCAGCATCCAATATTCAAAGTTTCGGCTCTTCCTGTGCCTGAATTACTACAGCGCCTTACCGTCTGGTCTTCATTGGTATTTGCTTTT
TGCTCACCCACTACGTTTTTTTTTTCGTTTTTCCCCCGCCCGGTCGAGCTGTCTGAGGTCGATGGTGCATCCGGTAAGCTCTTTCGGTATTCATCTCCAGAGCCCGCCCG
GATCACCAGCTAA
Protein sequenceShow/hide protein sequence
MQASCSLQSELRTVVRTDQPLRKALQRPETSRRLVQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVGSPRATHTNPTLLSPILSLSLLGNHE
EDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFAPMMAGQIRKKQVKLTRSIRTTSFLPDQHPIFKVSALPVPELLQRLTVWSSLVFAF
CSPTTFFFSFFPRPVELSEVDGASGKLFRYSSPEPARITS