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Clc11G07840 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07840
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationClcChr11:7774370..7782730
RNA-Seq ExpressionClc11G07840
SyntenyClc11G07840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5599254.1 hypothetical protein H5410_030624 [Solanum commersonii]1.4e-1589.13Show/hide
Query:  DACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRL
        DACIALPQP FHGL CSHFARRYYG RFCFLFLWLLRCFSSPG+ L
Subjt:  DACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRL

KAG9438446.1 hypothetical protein H6P81_021616 [Aristolochia fimbriata]8.8e-1856.31Show/hide
Query:  HDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRL-QWNRADSDILFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLS
        HDACIALPQPRFHGLGCSHFARRYYG RFCFLFLWLLRCFSSPG  L  W +                 F  LT +   G +L+F S S  SL T F +S
Subjt:  HDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRL-QWNRADSDILFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLS

Query:  SAV
          +
Subjt:  SAV

KAG9455515.1 hypothetical protein H6P81_000023 [Aristolochia fimbriata]2.2e-1397.37Show/hide
Query:  LPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPG
        LPQPRFHGLGCSHFARRYYG RFCFLFLWLLRCFSSPG
Subjt:  LPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPG

PHU10125.1 hypothetical protein BC332_21985 [Capsicum chinense]5.7e-1749.14Show/hide
Query:  QHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRLQWNRADSDILFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLS
        QH+ACIALPQPRFHGLGCSHFARRYYG RFCFLFLWLLRCFSSPG  L  +   S      +               SP + L     S  S+TT F +S
Subjt:  QHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRLQWNRADSDILFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLS

Query:  SAVLLSRHGGAKLSAP
          + + R  G     P
Subjt:  SAVLLSRHGGAKLSAP

QWQ49877.1 hypothetical protein [Zelkova schneideriana]1.3e-1366.28Show/hide
Query:  FLWLLRCFSS---PGFRLQWNRADSDI---LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHGGAKL
        FL L  CFSS     F ++ +     I   LFVDVMVVASSFFYTLTTT SPGMILLFY  SSRSL TN SLSSA LLSRHGG  L
Subjt:  FLWLLRCFSS---PGFRLQWNRADSDI---LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHGGAKL

TrEMBL top hitse value%identityAlignment
A0A068BFE0 Orf149b3.5e-1257.29Show/hide
Query:  MVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHG---------------------------------GAKLSAPTLIKKRQAA
        MV+ASSFFYTLTTTFSPGMILLFYSISSRSL TN  LSS  LLSRHG                                 GAKLSAPT +KKRQAA
Subjt:  MVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHG---------------------------------GAKLSAPTLIKKRQAA

A0A2G3BUH6 Uncharacterized protein2.7e-1749.14Show/hide
Query:  QHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRLQWNRADSDILFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLS
        QH+ACIALPQPRFHGLGCSHFARRYYG RFCFLFLWLLRCFSSPG  L  +   S      +               SP + L     S  S+TT F +S
Subjt:  QHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRLQWNRADSDILFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLS

Query:  SAVLLSRHGGAKLSAP
          + + R  G     P
Subjt:  SAVLLSRHGGAKLSAP

A0A2N9FRH9 Reverse transcriptase Ty1/copia-type domain-containing protein2.4e-2192.65Show/hide
Query:  LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHGGAKLSAPTLIKKRQAA
        LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSL TN SLSSA LLSRHGGAKLSAPT IK+RQAA
Subjt:  LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHGGAKLSAPTLIKKRQAA

A0A2N9GIJ9 Reverse transcriptase Ty1/copia-type domain-containing protein2.4e-2192.65Show/hide
Query:  LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHGGAKLSAPTLIKKRQAA
        LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSL TN SLSSA LLSRHGGAKLSAPT IK+RQAA
Subjt:  LFVDVMVVASSFFYTLTTTFSPGMILLFYSISSRSLTTNFSLSSAVLLSRHGGAKLSAPTLIKKRQAA

A0A3P6G3B5 Uncharacterized protein (Fragment)5.9e-1287.5Show/hide
Query:  DVWQHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWL
        ++ QHDA IALPQPRFHGLGCSHFARRYYG RFCFLFLWL
Subjt:  DVWQHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGCCCGCCCGTTCTTCCAAACGCGTCTTGGTCTTGGAGCAAGAACCTCCGCCCGCGGGCGGGCTTCCCTACTATTGGATCATGAACCAATGCTGTATA
GAAGGCCCCTTCATTATTATTAGTAGTAAGAAGTGCTGCTACAGGGAATGCTACCTTGACCCTGCTACTTCTAACGCTCGAATTGTCCGAGCTCCTGCAAGAGGA
TTAGCTCAAGGAAAAGCACTTGAAGTAACGGATGAGCGCCCTAGCGCATCCTTGCGCAAGACGCGGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGGCCGATCAT
TCCGCTGGCATCTTGCATTCACGCCTCCGCCGTTTGACTGCCGCTCGGGGATGTTACCTTGTTGAGCGCCCGATAATCAATGCACAAGGCTACCGCGAATTATCG
ACGGTGATGGAAGTATTCAAGCTCCCTGAAACCAAGAGAGGAGACAGAAGATGCATAAGATGCAGAGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAG
TTGTGCGATGATTTACTTCACGGGCGACGTCTCTGGTTCAAGTCCAGGTTATCCCCAATTCTAGCAAAAATCCAAGACCTAATCCGCTTCGGAGTTTCCAGGTTG
GATTTGAAAAAGAAAATAGGACTAGTTGGGTCGATAGAGGTGGTGAAATCTAACCTTTGCATCGATGTTTGGCAGCACGACGCTTGTATTGCTCTCCCACAACCC
CGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGAATTCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGGTTC
CGGCTACAGTGGAACCGTGCGGATTCTGACATTTTGTTTGTCGACGTCATGGTCGTTGCCTCATCCTTCTTTTATACGTTGACGACAACATTCTCACCGGGAATG
ATTCTTCTCTTTTATTCGATTTCATCAAGGAGCTTGACAACCAATTTTTCTCTTTCATCCGCTGTATTACTTTCTCGGCATGGAGGTGCCAAGCTATCCGCCCCT
ACTCTTATAAAAAAAAGGCAGGCTGCCCGGTGGGATGCCGTAGCTTTAAGAGATAGGGGCAGAGTCTCAACTACCACACTACTACTATACCACGGGAACTCCACG
AGTGGATTAGTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGCCCGCCCGTTCTTCCAAACGCGTCTTGGTCTTGGAGCAAGAACCTCCGCCCGCGGGCGGGCTTCCCTACTATTGGATCATGAACCAATGCTGTATA
GAAGGCCCCTTCATTATTATTAGTAGTAAGAAGTGCTGCTACAGGGAATGCTACCTTGACCCTGCTACTTCTAACGCTCGAATTGTCCGAGCTCCTGCAAGAGGA
TTAGCTCAAGGAAAAGCACTTGAAGTAACGGATGAGCGCCCTAGCGCATCCTTGCGCAAGACGCGGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGGCCGATCAT
TCCGCTGGCATCTTGCATTCACGCCTCCGCCGTTTGACTGCCGCTCGGGGATGTTACCTTGTTGAGCGCCCGATAATCAATGCACAAGGCTACCGCGAATTATCG
ACGGTGATGGAAGTATTCAAGCTCCCTGAAACCAAGAGAGGAGACAGAAGATGCATAAGATGCAGAGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAG
TTGTGCGATGATTTACTTCACGGGCGACGTCTCTGGTTCAAGTCCAGGTTATCCCCAATTCTAGCAAAAATCCAAGACCTAATCCGCTTCGGAGTTTCCAGGTTG
GATTTGAAAAAGAAAATAGGACTAGTTGGGTCGATAGAGGTGGTGAAATCTAACCTTTGCATCGATGTTTGGCAGCACGACGCTTGTATTGCTCTCCCACAACCC
CGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGAATTCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGGTTC
CGGCTACAGTGGAACCGTGCGGATTCTGACATTTTGTTTGTCGACGTCATGGTCGTTGCCTCATCCTTCTTTTATACGTTGACGACAACATTCTCACCGGGAATG
ATTCTTCTCTTTTATTCGATTTCATCAAGGAGCTTGACAACCAATTTTTCTCTTTCATCCGCTGTATTACTTTCTCGGCATGGAGGTGCCAAGCTATCCGCCCCT
ACTCTTATAAAAAAAAGGCAGGCTGCCCGGTGGGATGCCGTAGCTTTAAGAGATAGGGGCAGAGTCTCAACTACCACACTACTACTATACCACGGGAACTCCACG
AGTGGATTAGTTGATTGACTAGACTGAGACTCTCTTTGATATCAATCACTTTTCTAAGAAAAAGAAAATAGCAAAAATCATAAGAGAAGCAAGGTTCACAGAAGG
TTGGGAAGTAGTACGCCCGGTTCACTAGGTTCTACCACAGCAGGGCCCAATCATACTCAAAAGAAGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCT
TAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTAGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCTTTCAAAAGCGGTGGGAATAGTT
GAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGC
Protein sequenceShow/hide protein sequence
MEMPARSSKRVLVLEQEPPPAGGLPYYWIMNQCCIEGPFIIISSKKCCYRECYLDPATSNARIVRAPARGLAQGKALEVTDERPSASLRKTRWEESSPSLCPADH
SAGILHSRLRRLTAARGCYLVERPIINAQGYRELSTVMEVFKLPETKRGDRRCIRCRGNKHTWRAQYNGELCDDLLHGRRLWFKSRLSPILAKIQDLIRFGVSRL
DLKKKIGLVGSIEVVKSNLCIDVWQHDACIALPQPRFHGLGCSHFARRYYGIRFCFLFLWLLRCFSSPGFRLQWNRADSDILFVDVMVVASSFFYTLTTTFSPGM
ILLFYSISSRSLTTNFSLSSAVLLSRHGGAKLSAPTLIKKRQAARWDAVALRDRGRVSTTTLLLYHGNSTSGLVD