CuGenDBv2

Gene ID	Clc11G07870
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	ClcChr11:7787471..7788967
RNA-Seq Expression	Clc11G07870
Synteny	Clc11G07870
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0042651 - thylakoid membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR006243 - Photosystem I PsaA IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

OIT00553.1 putative mitochondrial protein, partial [Nicotiana attenuata]

2.1e-19

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRN+ASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKEHRLA EL       + W +  +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

OIT33719.1 putative mitochondrial protein, partial [Nicotiana attenuata]

3.0e-18

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

OIT35639.1 putative mitochondrial protein, partial [Nicotiana attenuata]

3.5e-19

65.26

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    NGI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

QVJ97967.1 hypothetical protein [Apium graveolens]

3.9e-18

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLT SRLISLPLATQMFQFAKFEKSKE RLA EL       + W    +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

YP_173374.1 hypothetical protein NitaMp027 [Nicotiana tabacum]

1.3e-18

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

TrEMBL top hits

e value

%identity

Alignment

A0A1J6INJ4 Putative mitochondrial protein

6.5e-19

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

A0A1J6IZR2 Putative mitochondrial protein (Fragment)

1.0e-19

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRN+ASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKEHRLA EL       + W +  +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

A0A314KY62 Putative mitochondrial protein (Fragment)

1.5e-18

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

A0A314L3P4 Putative mitochondrial protein (Fragment)

1.7e-19

65.26

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    NGI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

Q5M9R1 Uncharacterized protein

6.5e-19

64.21

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Query:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI
        ++   LLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLAT+MFQFAKFEKSKE RLA EL       + W    +GI   P A   +  S+ PGI
Subjt:  EQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLA-ELKSQVGDANLWFLCFNGI---PIAWMPLFESRKPGI

SwissProt top hits

e value

%identity

Alignment

A4QJB5 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-20

100

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Query:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
        IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Subjt:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG

A4QJJ9 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-20

100

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Query:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
        IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Subjt:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG

A4QK18 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-20

100

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Query:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
        IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Subjt:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG

Q3V534 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-20

100

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Query:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
        IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Subjt:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG

Q70Y03 Photosystem I P700 chlorophyll a apoprotein A1

4.4e-20

100

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Query:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
        IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Subjt:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

1.1e-05

48.84

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Query:  LVFAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLAGLLGL
        L  +AL L  GW H   K  P+++WF++ ES LNHHL+GL G+
Subjt:  LVFAALMLFAGWFHYH-KAAPKLAWFQDVESMLNHHLAGLLGL

ATCG00350.1 Photosystem I, PsaA/PsaB protein

3.1e-21

100

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Query:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
        IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG
Subjt:  IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG

Sequences

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CDS sequence

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ATGGGCGAAAGCCTGACGGAGCAATGCCGCGCTTTGCTAAGGAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTC
TCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCACAGACTAGCTGAACTCAAAAGTCAAGTAGGCGACGCGAATC
TATGGTTTCTATGTTTCAATGGGATACCAATTGCTTGGATGCCCTTGTTTGAAAGCCGGAAACCTGGAATAGTAGAAAGCAGCGGTAAGAGACCGATTGAACAGCTTTTC
TTGGCTAGAATAGCTCTATTTGAACTAGTTGAAGCGGTAGTGGAAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAGGTTCTACGGACCGATGCCTGC
TGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGATACAGAAATGATAGAATCATTTTGGATCGGACCAAATACGGGTCTCTGATAATTGGTGCATTAGTCTTTGCAG
CCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCTAAATTGGCTTGGTTCCAAGATGTCGAATCCATGTTGAATCACCATTTAGCGGGTCTGTTAGGA
CTTGGGCCGCCCAAAACCTGGAGCTAA

mRNA sequence

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Protein sequence

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MGESLTEQCRALLRNEASCLFFFKPPIRSRSPLLTGSRLISLPLATQMFQFAKFEKSKEHRLAELKSQVGDANLWFLCFNGIPIAWMPLFESRKPGIVESSGKRPIEQLF
LARIALFELVEAVVEGAQEYFAPQPSLFYRFYGPMPAASSGRKESLICRYRNDRIILDRTKYGSLIIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLG
LGPPKTWS

Clc11G07870 (gene) of Watermelon (cordophanus) v2 genome