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Clc11G07920 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07920
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
Genome locationClcChr11:7800508..7803031
RNA-Seq ExpressionClc11G07920
SyntenyClc11G07920
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1728903.1 unnamed protein product [Brassica napus]2.2e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

KAG2241182.1 hypothetical protein Bca52824_096832 [Brassica carinata]2.2e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

KAG4154841.1 hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum]2.2e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

KYP48942.1 hypothetical protein KK1_029343, partial [Cajanus cajan]1.9e-15100Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

QHO30183.1 3-ketoacyl-CoA synthase [Arachis hypogaea]9.7e-1597.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMA SHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

TrEMBL top hitse value%identityAlignment
A0A078E1E5 BnaC09g29260D protein1.0e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

A0A151S2B1 Uncharacterized protein (Fragment)9.4e-16100Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

A0A218VSE2 Uncharacterized protein1.0e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

A0A3P6GJR6 Uncharacterized protein1.0e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

A0A6D2HHK8 Uncharacterized protein1.0e-1497.83Show/hide
Query:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN
        TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Subjt:  TSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

SwissProt top hitse value%identityAlignment
B1NWK2 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic1.1e-1078.57Show/hide
Query:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
        L    +INVLIIFAVMFM GSEY KDFNLWTVG+GVT LVCT
Subjt:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT

Q06GK8 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic1.5e-1076.19Show/hide
Query:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
        L    +INVLIIFAVMFMKGSEYS DF++WTVG+GVT LVCT
Subjt:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT

Q09WW5 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic8.8e-1176.19Show/hide
Query:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
        L    +INVLIIFAVMFM GSEY KDFNLWTVGNG T L+CT
Subjt:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT

Q2L958 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic1.5e-1073.81Show/hide
Query:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
        L    +INVLI+FAVMFM GSEY KDFNLWT+GNG+T LVCT
Subjt:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT

Q2QD38 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic1.9e-1388.1Show/hide
Query:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
        L    +INVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
Subjt:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT

Arabidopsis top hitse value%identityAlignment
ATCG01080.1 NADH:ubiquinone/plastoquinone oxidoreductase, chain 62.4e-1173.81Show/hide
Query:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT
        L    +INVLIIFAVMFM  SEYS DFNLWT+GNG+T LVCT
Subjt:  LAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTAGCCTTCTCCTCATCATTTACTAAAATAGTGACCTCATTATTGCCTATTCTAGCAAAACCACCCATCAGAGCCATCGTTAACCATCTGTCATTAGGAGTAAG
GCAAGGATCCAACGATGTTGAAAATTCACCCCACCTTCTGGACATGGGAGATGATCGTAACATTATTGCTTTCGATGACCCAGAAAGTCTTTTGACTGCGATCTGTGATC
ATTTTTCTTTCTCTGGAGGAAAGCAATCCAAATCAAATCAGTACTGTAGCAGTCCGCTTTCAAGGATCTATGTTCCTGAACAGTCTCGAAGAAGGCCACCAGCACCCGAC
TTACCAGAATGTCCCGTGGCAGCACAATGCAAGTCTTGGTTCCTCTTGGAAGCACCATCAGTATTGAATTTTAACCGGAAGGAAATTCCCAAGCAATCAACTTGCTTACC
TTCATACTTGGCTCAGTTTTCTTCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTTAATCTTTGGACCGTTGGGAATG
GAGTTACTTTTCTGGTTTGTACAAGGACAATGCCCTTTGAGGCGACTTCGGGCATGGCTAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCAC
CGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTAGCCTTCTCCTCATCATTTACTAAAATAGTGACCTCATTATTGCCTATTCTAGCAAAACCACCCATCAGAGCCATCGTTAACCATCTGTCATTAGGAGTAAG
GCAAGGATCCAACGATGTTGAAAATTCACCCCACCTTCTGGACATGGGAGATGATCGTAACATTATTGCTTTCGATGACCCAGAAAGTCTTTTGACTGCGATCTGTGATC
ATTTTTCTTTCTCTGGAGGAAAGCAATCCAAATCAAATCAGTACTGTAGCAGTCCGCTTTCAAGGATCTATGTTCCTGAACAGTCTCGAAGAAGGCCACCAGCACCCGAC
TTACCAGAATGTCCCGTGGCAGCACAATGCAAGTCTTGGTTCCTCTTGGAAGCACCATCAGTATTGAATTTTAACCGGAAGGAAATTCCCAAGCAATCAACTTGCTTACC
TTCATACTTGGCTCAGTTTTCTTCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTTAATCTTTGGACCGTTGGGAATG
GAGTTACTTTTCTGGTTTGTACAAGGACAATGCCCTTTGAGGCGACTTCGGGCATGGCTAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCAC
CGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA
Protein sequenceShow/hide protein sequence
MSLAFSSSFTKIVTSLLPILAKPPIRAIVNHLSLGVRQGSNDVENSPHLLDMGDDRNIIAFDDPESLLTAICDHFSFSGGKQSKSNQYCSSPLSRIYVPEQSRRRPPAPD
LPECPVAAQCKSWFLLEAPSVLNFNRKEIPKQSTCLPSYLAQFSSINVLIIFAVMFMKGSEYSKDFNLWTVGNGVTFLVCTRTMPFEATSGMASSHSVTGGVYKARERIH
RRMADRRLLAIPASCRRVAAYNPN