CuGenDBv2

Gene ID	Clc11G07940
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit beta
Genome location	ClcChr11:7807154..7809680
RNA-Seq Expression	Clc11G07940
Synteny	Clc11G07940
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

1.3e-19

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]

1.3e-19

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]

1.3e-19

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

1.3e-19

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]

1.3e-19

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

TrEMBL top hits

e value

%identity

Alignment

A0A109WXU0 DNA-directed RNA polymerase subunit beta

6.2e-20

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

6.2e-20

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

6.2e-20

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

A0A218KG28 DNA-directed RNA polymerase subunit beta

6.2e-20

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

A0A249RZI0 DNA-directed RNA polymerase subunit beta

6.2e-20

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

SwissProt top hits

e value

%identity

Alignment

A4QK10 DNA-directed RNA polymerase subunit beta

6.4e-22

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

A4QK97 DNA-directed RNA polymerase subunit beta

6.4e-22

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

A6MM28 DNA-directed RNA polymerase subunit beta

6.4e-22

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIP PEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

P50546 DNA-directed RNA polymerase subunit beta

6.4e-22

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

Q4VZP1 DNA-directed RNA polymerase subunit beta

1.7e-22

91.23

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

4.5e-23

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLAT

Sequences

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CDS sequence

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ATGACTGCATCAAAGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACAC
CGAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGTATCAGCAAGAGCCCGTGCTTACTTATAAAT
CTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCGAAACCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTA
CGATCTTTGGCTTTGGAACTGAATCATTTCCTTGCCACGCTACTTTTTCAATCAAGAAAGTCCTCGGGATGCAATCGGCCATGGAAATTTTGA

mRNA sequence

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Protein sequence

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MTASKMHLLVLVHLRILNWLVVNRPRLWNKGLSRTYTEGPLISSFSELGLWKKEPRRKYQQQQYQQEPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVREL
RSLALELNHFLATLLFQSRKSSGCNRPWKF

Clc11G07940 (gene) of Watermelon (cordophanus) v2 genome