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Clc11G07943 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G07943
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L23, chloroplastic
Genome locationClcChr11:7808928..7809747
RNA-Seq ExpressionClc11G07943
SyntenyClc11G07943
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009536 - plastid (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012678 - Ribosomal protein L23/L15e core domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3946242.1 hypothetical protein CMV_027466 [Castanea mollissima]3.0e-2493.55Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQH C KGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
KAG4119256.1 hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum]5.3e-2180Show/hide
Query:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPIMGHTMHYRRMIITLQP             AVDSQVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLIYGQHRCGKGR
KAG5606025.1 hypothetical protein H5410_027517 [Solanum commersonii]1.8e-2190.32Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL GK RRMGPIMGHTMHYRRMIITLQP  DSQVKSNPRNNLIYGQ RCGKGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
TYI09250.1 hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum]8.8e-2498.25Show/hide
Query:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
TYI09266.1 hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum]8.8e-2498.25Show/hide
Query:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
TrEMBL top hitse value%identityAlignment
A0A2G9G6U0 Mitochondrial/chloroplast ribosomal protein L24.1e-1972Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITL-------------QPAVDSQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL  KGRRMGPIMGHTMHYRRMIIT+                VDSQVKSNPRNNLIYGQH CGKGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITL-------------QPAVDSQVKSNPRNNLIYGQHRCGKGR
A0A411K5D6 Ribosomal protein L21.4e-1960.82Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-----------------------------------AVDSQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP                                   AVDSQVKSNPRNNLIYGQ RCGKGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-----------------------------------AVDSQVKSNPRNNLIYGQHRCGKGR
A0A5D2D6S0 50S ribosomal protein L2, chloroplastic2.9e-2077.14Show/hide
Query:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKG R+GPIMGHTMHYRRMIITLQP             AVDSQVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLIYGQHRCGKGR
A0A5D2P0J4 50S ribosomal protein L2, chloroplastic4.3e-2498.25Show/hide
Query:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
A0A5D2P3Y3 50S ribosomal protein L2, chloroplastic4.3e-2498.25Show/hide
Query:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
SwissProt top hitse value%identityAlignment
A0A378 50S ribosomal protein L23, chloroplastic1.6e-1294.59Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
A0ZZ77 50S ribosomal protein L23, chloroplastic1.6e-1294.59Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
Q06GT3 50S ribosomal protein L23, chloroplastic1.6e-1294.59Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
Q2L943 50S ribosomal protein L23, chloroplastic1.6e-1294.59Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
Q4VZK6 50S ribosomal protein L23, chloroplastic1.6e-1294.59Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPIMGHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
Arabidopsis top hitse value%identityAlignment
ATCG00830.1 ribosomal protein L23.6e-0782.76Show/hide
Query:  TLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        T   AVDSQVKSNPRNNLI GQH CGKGR
Subjt:  TLQPAVDSQVKSNPRNNLIYGQHRCGKGR
ATCG00840.1 ribosomal protein L23.16.3e-1286.49Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
ATCG01300.1 ribosomal protein L236.3e-1286.49Show/hide
Query:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
        V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQP
ATCG01310.1 ribosomal protein L23.6e-0782.76Show/hide
Query:  TLQPAVDSQVKSNPRNNLIYGQHRCGKGR
        T   AVDSQVKSNPRNNLI GQH CGKGR
Subjt:  TLQPAVDSQVKSNPRNNLIYGQHRCGKGR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGAT
TGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTAATAGCTA
TGAATAGTCATCGACTCCTGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAGTCAA
GTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGAT
TGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTAATAGCTA
TGAATAGTCATCGACTCCTGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAGTCAA
GTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG
Protein sequenceShow/hide protein sequence
MWALFLIEKGFNKKEIVGSKWTFKISMADCIPRTFLIEKVAWQGNDSVPKPKIVILERAIEKILEYPQVSVIAMNSHRLLGKGRRMGPIMGHTMHYRRMIITLQPAVDSQ
VKSNPRNNLIYGQHRCGKGREGVHVKYPLGIMSS