CuGenDBv2

Gene ID	Clc11G08000
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	ClcChr11:7828379..7828675
RNA-Seq Expression	Clc11G08000
Synteny	Clc11G08000
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR006243 - Photosystem I PsaA IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ATL62060.1 photosystem I P700 chlorophyll a apoprotein A1 [Prismatomeris sp. Kainulainen et al. 39]

1.6e-24

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

ATL62137.1 photosystem I P700 chlorophyll a apoprotein A1 [Schizocolea linderi]

1.6e-24

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

ATL62924.1 photosystem I P700 chlorophyll a apoprotein A1 [Mitchella repens]

1.6e-24

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

QFS20328.1 photosystem I P700 chlorophyll a apoprotein A1 [Saprosma merrillii]

1.6e-24

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

QTZ18577.1 photosystem I P700 apoprotein A1 [Damnacanthus indicus]

1.6e-24

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

TrEMBL top hits

e value

%identity

Alignment

A0A218KG56 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-24

98.25

Show/hide

Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

A0A5P8TZ73 Photosystem I P700 chlorophyll a apoprotein A1

7.6e-25

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

A0A6F8F1G7 Photosystem I P700 chlorophyll a apoprotein A1

7.6e-25

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

A0A6F8FJT8 Photosystem I P700 chlorophyll a apoprotein A1

7.6e-25

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

A0A6F8FMI5 Photosystem I P700 chlorophyll a apoprotein A1

7.6e-25

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG+TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

SwissProt top hits

e value

%identity

Alignment

A0A335 Photosystem I P700 chlorophyll a apoprotein A1

2.7e-27

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

A0ZZ35 Photosystem I P700 chlorophyll a apoprotein A1

2.7e-27

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

Q2L907 Photosystem I P700 chlorophyll a apoprotein A1

2.7e-27

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

2.7e-27

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

Q49KZ8 Photosystem I P700 chlorophyll a apoprotein A1

2.7e-27

98.25

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKYAEFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00350.1 Photosystem I, PsaA/PsaB protein

4.3e-28

96.49

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Query:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG
        INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEG TPFFTLNWSKY+EFLTFRG
Subjt:  INQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRG

Sequences

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CDS sequence

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ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGTGCGAGCAGTGGTGGACGAAGCGG
AAGCGAGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCGCAACTTTATCCTAGTTTTG
CTGAGGGAACAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGAGGAGCGCATTAG

mRNA sequence

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Protein sequence

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MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSEINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGTTPFFTLNWSKYAEFLTFRGAH

Clc11G08000 (gene) of Watermelon (cordophanus) v2 genome