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Clc11G08010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationClcChr11:7829238..7830764
RNA-Seq ExpressionClc11G08010
SyntenyClc11G08010
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0046034 - ATP metabolic process (biological process)
GO:1902600 - proton transmembrane transport (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0048038 - quinone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONM53403.1 NAD(P)H-quinone oxidoreductase subunit 6 chloroplastic [Zea mays]3.0e-1587.23Show/hide
Query:  SSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVG
        SS SLLPLH R N+RLARGNLCTPPLPFGRPTPHRNC PETVPWP G
Subjt:  SSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVG

PHT76211.1 hypothetical protein T459_19733 [Capsicum annuum]6.6e-1572.13Show/hide
Query:  HGRDTGTASLSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR
        + R      L S SLLPLH RANLRLARGNLCTPPL FGRP PHRNC PE V W VGPDTR
Subjt:  HGRDTGTASLSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR

PPR91547.1 hypothetical protein GOBAR_AA29147 [Gossypium barbadense]8.7e-1563.51Show/hide
Query:  FPFFAP-----MSPHGR----DTGTASLSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPV
        FP  +P      SP  R    +     + S SLLPLH RANLR ARGNLCTPPLPFGRPTPHRNC PETVPWPV
Subjt:  FPFFAP-----MSPHGR----DTGTASLSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPV

PPS08684.1 hypothetical protein GOBAR_AA11954 [Gossypium barbadense]3.5e-1684.62Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR
        + S SLLPLH RANLR ARGNLCTPPLPFGRPT HRNC PE VPWPVGPDTR
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR

RYR67074.1 hypothetical protein Ahy_A03g013321 [Arachis hypogaea]2.9e-1890.38Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR
        L S SLLPLH RANLRLARGNLCTPPLPFGRPTPHRNC PETVPWPVGP TR
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR

TrEMBL top hitse value%identityAlignment
A0A2N9EWN1 Uncharacterized protein5.9e-1772.31Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC
        + S SLLPLH RANLRLARGNLCTPPLPFGRPTPHRNC PETVPWPV       S+  SL  R C
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC

A0A2N9HR91 Uncharacterized protein5.9e-1772.31Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC
        + S SLLPLH RANLRLARGNLCTPPLPFGRPTPHRNC PETVPWPV       S+  SL  R C
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC

A0A2N9I3B0 Uncharacterized protein5.9e-1772.31Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC
        + S SLLPLH RANLRLARGNLCTPPLPFGRPTPHRNC PETVPWPV       S+  SL  R C
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC

A0A2N9I7K2 Uncharacterized protein5.9e-1772.31Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC
        + S SLLPLH RANLRLARGNLCTPPLPFGRPTPHRNC PETVPWPV       S+  SL  R C
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTRRASLGGSLRARHC

A0A445DV65 ATP-synt_ab_N domain-containing protein1.4e-1890.38Show/hide
Query:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR
        L S SLLPLH RANLRLARGNLCTPPLPFGRPTPHRNC PETVPWPVGP TR
Subjt:  LSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNCQPETVPWPVGPDTR

SwissProt top hitse value%identityAlignment
A0ZZ35 Photosystem I P700 chlorophyll a apoprotein A12.8e-08100Show/hide
Query:  MIIRSPEPEVKILVDRDPVKTSFEEWAR
        MIIRSPEPEVKILVDRDPVKTSFEEWAR
Subjt:  MIIRSPEPEVKILVDRDPVKTSFEEWAR

Q06GZ7 Photosystem I P700 chlorophyll a apoprotein A12.8e-08100Show/hide
Query:  MIIRSPEPEVKILVDRDPVKTSFEEWAR
        MIIRSPEPEVKILVDRDPVKTSFEEWAR
Subjt:  MIIRSPEPEVKILVDRDPVKTSFEEWAR

Q09FW1 Photosystem I P700 chlorophyll a apoprotein A12.8e-08100Show/hide
Query:  MIIRSPEPEVKILVDRDPVKTSFEEWAR
        MIIRSPEPEVKILVDRDPVKTSFEEWAR
Subjt:  MIIRSPEPEVKILVDRDPVKTSFEEWAR

Q2L907 Photosystem I P700 chlorophyll a apoprotein A12.8e-08100Show/hide
Query:  MIIRSPEPEVKILVDRDPVKTSFEEWAR
        MIIRSPEPEVKILVDRDPVKTSFEEWAR
Subjt:  MIIRSPEPEVKILVDRDPVKTSFEEWAR

Q8S8X4 Photosystem I P700 chlorophyll a apoprotein A12.8e-08100Show/hide
Query:  MIIRSPEPEVKILVDRDPVKTSFEEWAR
        MIIRSPEPEVKILVDRDPVKTSFEEWAR
Subjt:  MIIRSPEPEVKILVDRDPVKTSFEEWAR

Arabidopsis top hitse value%identityAlignment
ATCG00350.1 Photosystem I, PsaA/PsaB protein5.8e-0992.86Show/hide
Query:  MIIRSPEPEVKILVDRDPVKTSFEEWAR
        MIIRSPEPEVKILVDRDP+KTSFEEWA+
Subjt:  MIIRSPEPEVKILVDRDPVKTSFEEWAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATCCGCGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGG
CCTCCCGCTGGGGGCCCGCTATGCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCCCATGTCGCCACACGGGAGGGACACGGGGACGGCTTCCCTCA
GCTCAGTCTCCCTTCTGCCTTTGCACTTGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGT
CAACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGCGAGCTTCTCTAGGTGGGTCGCTTCGCGCAAGACATTGCTTAGGACCAACGGGTCACACGACAGGTGC
ACGATTGACTTTGCACGCTCCATCCTTCGGCCCGCAAGACTCTCAGGAATTAATCGGCCCGGCGGCACTATACCAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAG
AAGTCAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCCGGGCTATTCGTCGCGTTGACTACTACCTTTTTGACATGTTCTTCGTCGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATCCGCGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGG
CCTCCCGCTGGGGGCCCGCTATGCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCCCATGTCGCCACACGGGAGGGACACGGGGACGGCTTCCCTCA
GCTCAGTCTCCCTTCTGCCTTTGCACTTGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGT
CAACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGCGAGCTTCTCTAGGTGGGTCGCTTCGCGCAAGACATTGCTTAGGACCAACGGGTCACACGACAGGTGC
ACGATTGACTTTGCACGCTCCATCCTTCGGCCCGCAAGACTCTCAGGAATTAATCGGCCCGGCGGCACTATACCAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAG
AAGTCAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCCGGGCTATTCGTCGCGTTGACTACTACCTTTTTGACATGTTCTTCGTCGCGTAG
Protein sequenceShow/hide protein sequence
MSRLFTEREKQMNNHPRTTTQLSGARSTTELIARRAGLPLGARYAKSERNPIPLFPFFAPMSPHGRDTGTASLSSVSLLPLHLRANLRLARGNLCTPPLPFGRPTPHRNC
QPETVPWPVGPDTRRASLGGSLRARHCLGPTGHTTGARLTLHAPSFGPQDSQELIGPAALYQEDSMIIRSPEPEVKILVDRDPVKTSFEEWARAIRRVDYYLFDMFFVA