CuGenDBv2

Gene ID	Clc11G08060
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome location	ClcChr11:7838393..7839508
RNA-Seq Expression	Clc11G08060
Synteny	Clc11G08060
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR003918 - NADH:ubiquinone oxidoreductase IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABI97463.1 NADH-plastoquinone oxidoreductase subunit 4, partial [Cucumis sativus]

4.4e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

YP_009004091.1 NADH-plastoquinone oxidoreductase subunit 4 [Cucumis hystrix]

4.4e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

YP_009317436.1 NADH dehydrogenase subunit 4 [Coccinia grandis]

4.4e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

YP_009326040.1 NADH dehydrogenase subunit 4 [Citrullus lanatus]

4.4e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

YP_009456197.1 NADH dehydrogenase subunit 4 [Lagenaria siceraria]

4.4e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE40 NAD(P)H-quinone oxidoreductase chain 4

2.1e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

A0A1P8LEU5 NAD(P)H-quinone oxidoreductase chain 4

2.1e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

A0A1X9Q182 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.1e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

A0A218KG94 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.1e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

A0A2Z2CH55 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.1e-16

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

SwissProt top hits

e value

%identity

Alignment

Q06R80 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

7.0e-17

89.58

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGT+YDRIRLVYLDEMGG+AIP+PKIFT FSI SMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

Q09WW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

8.3e-18

95.83

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

Q0ZIW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

1.4e-17

91.67

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRL+YLDEMGG+AIP+PKIFT FSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

Q2PMN2 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

7.0e-17

87.5

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDR+RL+YLDEMGG+AIP+PKIFT F+ILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

5.8e-19

100

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

Arabidopsis top hits

e value

%identity

Alignment

ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein

6.5e-18

91.67

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Query:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP
        GAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFT F+ILSMASLALP
Subjt:  GAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALP

Sequences

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CDS sequence

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ATGTTACTTAAGAGGGTAGACCGTAGAGGGTTCAACAAAGAAAAGCAAGAAAACTGTCAAAGAGCTTTTGAGGACAACAAGCAGGCAGTGATTGATGACTCCGTATTGCA
GTTGCCAGATTACACTAAGCCATTTGAAGTACACACGGATGCGTCAGACTATGCCATAGGCGGTGCTGCGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTC
TGGTTTATCTCGATGAAATGGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGAGTACCTTTTCGAA
ATCCCGTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCTACCGTTTCACTGGCTCTAGTATTCACAAGCTTTC
AAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAG

mRNA sequence

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Protein sequence

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MLLKRVDRRGFNKEKQENCQRAFEDNKQAVIDDSVLQLPDYTKPFEVHTDASDYAIGGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALPEYLFE
IPCRNLGSSCYTRGEGKTSSLRFSSYRFTGSSIHKLSRNGILSSTLHYFG

Clc11G08060 (gene) of Watermelon (cordophanus) v2 genome