CuGenDBv2

Gene ID	Clc11G08065
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr11:7842910..7843769
RNA-Seq Expression	Clc11G08065
Synteny	Clc11G08065
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domains	IPR000172 - Glucose-methanol-choline oxidoreductase, N-terminal IPR008543 - Uncharacterised protein family Ycf2 IPR036188 - FAD/NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

3.1e-20

96.49

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLN FLDNKP+GFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

QZL38725.1 Ycf2 protein [Citrullus ecirrhosus]

2.2e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

YP_009326033.1 Ycf2 [Citrullus lanatus]

2.2e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

YP_009420838.1 Ycf2 [Citrullus colocynthis]

2.2e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

YP_009752624.1 Ycf2 protein [Trichosanthes homophylla]

8.2e-21

83.33

Show/hide

Query:  ALGSPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        AL  P+ +L+ G   GTGRSYLVKYLATNSYLPFITVFLN FLDNKP+GFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  ALGSPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LED5 Protein Ycf2

1.1e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

A0A1P8LF93 Protein Ycf2

1.1e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

A0A249RXF2 Protein Ycf2

1.1e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

A0A343A8H4 Protein Ycf2

1.1e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

A0A343F2F1 Protein Ycf2

1.1e-21

100

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

SwissProt top hits

e value

%identity

Alignment

A4GGE1 Protein Ycf2

1.0e-18

87.72

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLA NSY+PFITVFLN FLDNKP+GFLIDDSDDIDDS   DDSDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

A4GYV4 Protein Ycf2

2.5e-20

89.47

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GFLIDD DDIDDS DID SDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

B1NWJ3 Protein Ycf2

5.0e-21

91.07

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDID
        GTGRSYLVKYLATNSYLPF+TVFLN FL+NKP+GFLIDDSDDIDDS DIDDSDDID
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDID

Q14F97 Protein Ycf2

2.5e-20

89.47

Show/hide

Query:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GFLIDD DDIDDS DID SDDIDR
Subjt:  GTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

Q2QD30 Protein Ycf2

1.4e-18

76.06

Show/hide

Query:  SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGF--LIDDSDDIDDSGDIDDSDDIDR
        SP +L++  I  GTGRSYLVKYLATNSYLPFITVFLN F DNKP+      DDSDDIDDSGDIDDSDDIDR
Subjt:  SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGF--LIDDSDDIDDSGDIDDSDDIDR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-18

73.91

Show/hide

Query:  SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        S  +L++  I  GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GF IDD  DIDDS DID S+DIDR
Subjt:  SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-18

73.91

Show/hide

Query:  SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR
        S  +L++  I  GTGRSYLVKYLATNSY+PFITVFLN FLDNKP+GF IDD  DIDDS DID S+DIDR
Subjt:  SPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTCTGTGCTGGGGCTCTCGGAAGCCCACAGCTTCTGCTTCTGAGTGGCATTGGACCTGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCT
TCCTTTCATTACAGTATTTCTGAACACGTTCCTGGATAACAAGCCTGAGGGTTTTCTTATTGATGATAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACG
ATATCGACCGCAGGTCCGCTATAAAGCCTACCGGCCAGAAAGTCTTCAAGAACGGGAAAGCTGACCAAAAGACTATTCTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLCAGALGSPQLLLLSGIGPGTGRSYLVKYLATNSYLPFITVFLNTFLDNKPEGFLIDDSDDIDDSGDIDDSDDIDRRSAIKPTGQKVFKNGKADQKTIL

Clc11G08065 (gene) of Watermelon (cordophanus) v2 genome