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Clc11G08090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUSP domain-containing protein
Genome locationClcChr11:7845934..7849454
RNA-Seq ExpressionClc11G08090
SyntenyClc11G08090
Gene Ontology termsGO:0016579 - protein deubiquitination (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004843 - thiol-dependent ubiquitin-specific protease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD35503.1 TPA_asm: hypothetical protein HUJ06_006143 [Nelumbo nucifera]3.6e-1072.55Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAG
        MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQP TRA   ++ +    G
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAG

KAF4387291.1 hypothetical protein F8388_016700 [Cannabis sativa]7.2e-1194.87Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA
        MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQPATRA
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA

KAG0537795.1 hypothetical protein BDA96_03G178900 [Sorghum bicolor]1.4e-0987.18Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA
        MKG+TNIPCLHIGSRT S+GSKTANSY+AIEPAQP TRA
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA

PRQ20497.1 hypothetical protein RchiOBHm_Chr7g0228831 [Rosa chinensis]6.1e-1092.11Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATR
        MKGITNIPCLHIGSRT S+GSKTANSYRAI+PAQPATR
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATR

YP_358607.1 hypothetical protein PhapfoPp060 [Phalaenopsis aphrodite subsp. formosana]8.0e-1070.59Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAG
        MKGITN+PCLHIGSRT S+GSKTANSYRAIEPAQP TRA   ++ +    G
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAG

TrEMBL top hitse value%identityAlignment
A0A251UVW0 Uncharacterized protein7.8e-1192.31Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA
        MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQPAT+A
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA

A0A2P6PEZ3 Uncharacterized protein2.9e-1092.11Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATR
        MKGITNIPCLHIGSRT S+GSKTANSYRAI+PAQPATR
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATR

A0A453JFF5 Uncharacterized protein2.9e-1089.74Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA
        MKGITNIPCLHIGSRT S+GSKTANSY+AIEPAQP TRA
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA

A0A453KSM4 Uncharacterized protein2.9e-1089.74Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA
        MKGITNIPCLHIGSRT S+GSKTANSY+AIEPAQP TRA
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA

A0A7J6GWY3 Uncharacterized protein3.5e-1194.87Show/hide
Query:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA
        MKGITNIPCLHIGSRT S+GSKTANSYRAIEPAQPATRA
Subjt:  MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCAAGAACAAGATCAAAGGGATCAAAAACTGCTAATTCGTATAGGGCCATTGAACCGGCCCAACCAGCAAC
TAGAGCTACCTTTGGTCTCTACCCGGACCCAGGCGATGCGGGAATAGCTTCTAACGTTCCTGTTGGAGATGCAAGTATTGTCGTAGCTGCTGTCGAGGATGTTGGAGATG
CGAGCACTTTTGCCGAAGCAGGAACGGTTGGCGCTGATCTTGTCGAGGCGAGAAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCAAGAACAAGATCAAAGGGATCAAAAACTGCTAATTCGTATAGGGCCATTGAACCGGCCCAACCAGCAAC
TAGAGCTACCTTTGGTCTCTACCCGGACCCAGGCGATGCGGGAATAGCTTCTAACGTTCCTGTTGGAGATGCAAGTATTGTCGTAGCTGCTGTCGAGGATGTTGGAGATG
CGAGCACTTTTGCCGAAGCAGGAACGGTTGGCGCTGATCTTGTCGAGGCGAGAAAGGACTGA
Protein sequenceShow/hide protein sequence
MKGITNIPCLHIGSRTRSKGSKTANSYRAIEPAQPATRATFGLYPDPGDAGIASNVPVGDASIVVAAVEDVGDASTFAEAGTVGADLVEARKD