CuGenDBv2

Gene ID	Clc11G08095
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	ClcChr11:7848277..7848702
RNA-Seq Expression	Clc11G08095
Synteny	Clc11G08095
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0032259 - methylation (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AGL72352.1 ribulose-1,5-bisphosphate carboxylase large subunit, partial [Nolina bigelovii]

1.5e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARR+
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

AJB84563.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Laportea interrupta]

2.5e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

CAJ86723.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasia trifurcata]

2.5e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

KAG2275616.1 hypothetical protein Bca52824_058171 [Brassica carinata]

1.9e-24

94.83

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FAR++
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

YP_009476306.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsior]

2.5e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

TrEMBL top hits

e value

%identity

Alignment

A0A0F7EX19 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

C4MXK3 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

E5RNG3 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

Q8SLM7 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-24

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

R4QG37 Ribulose bisphosphate carboxylase large chain (Fragment)

7.1e-25

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARR+
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

SwissProt top hits

e value

%identity

Alignment

P28382 Ribulose bisphosphate carboxylase large chain (Fragment)

3.3e-27

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

P28399 Ribulose bisphosphate carboxylase large chain

3.3e-27

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

Q05554 Ribulose bisphosphate carboxylase large chain (Fragment)

3.3e-27

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

Q32360 Ribulose bisphosphate carboxylase large chain (Fragment)

3.3e-27

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

Q33584 Ribulose bisphosphate carboxylase large chain

3.3e-27

96.55

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07732.1 Ribulose bisphosphate carboxylase large chain, catalytic domain

4.8e-26

87.93

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEA+YK+QAETG IKGHYLNAT GTCEEM+KRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

ATCG00490.1 ribulose-bisphosphate carboxylases

6.8e-28

94.83

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEM+KRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

ATMG00280.1 Ribulose bisphosphate carboxylase large chain, catalytic domain

1.3e-26

89.66

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Query:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI
        DENVNSQPFMRWRDRFLFCAEA+YK+QAETG IKGHYLNATAGTCEEM+KRAVFAR +
Subjt:  DENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRI

Sequences

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CDS sequence

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ATGGCGGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGG
ACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTC
CTAGTCCTTTGGTTATCCCAACAATGGGGGATAACAACCGCTTATGCGGCCCTTCTTCCTTCCCTTTCTTACCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGC
GCGGGTTCAATTCCCGTCGTTCGCCCATAA

mRNA sequence

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Protein sequence

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MADENVNSQPFMRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARRIVHGTTIEILRTIFPSPLVIPTMGDNNRLCGPSSFPFLPSGSRQWIVNPPC
AGSIPVVRP

Clc11G08095 (gene) of Watermelon (cordophanus) v2 genome