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Clc11G08100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP synthase subunit a, chloroplastic
Genome locationClcChr11:7849804..7850600
RNA-Seq ExpressionClc11G08100
SyntenyClc11G08100
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD2152081.1 hypothetical protein E3N88_41733 [Mikania micrantha]6.1e-2094.64Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFTHDLA
        NDPTT GPF+RCTKAITLRSASTKKATPSRSGRIIPSISAGTAMY+FDFLFTHDLA
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFTHDLA

KAD5508508.1 hypothetical protein E3N88_16211 [Mikania micrantha]4.6e-1592Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL
        N+PTTSGPFRRCTKAITLRSASTKKATPSRSGRII SISAGT MY+FDFL
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL

PPD71372.1 hypothetical protein GOBAR_DD31748 [Gossypium barbadense]1.6e-2090.16Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFTHDLAGTGRS
        NDPTTSGPFRRCTKAITL SASTKKATPS+SGRIIPSISAGTAMYVFDFLFTHDLA + +S
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFTHDLAGTGRS

YP_002720156.1 ORF126 [Jatropha curcas]9.2e-1671.88Show/hide
Query:  DFLFTHD--LAGTGRSKNGVLSGRVNSIIEACWHSSLPSPFRAYPKENPVFLGREYLNRMNRPV
        D+  TH   LA     +  VLSGRVNSII+ CWHSSLPSPFRAYPKENPV LGREYLNR NRPV
Subjt:  DFLFTHD--LAGTGRSKNGVLSGRVNSIIEACWHSSLPSPFRAYPKENPVFLGREYLNRMNRPV

YP_009526579.1 hypothetical protein [Ammopiptanthus mongolicus]1.1e-1390Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL
        NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAM    F+
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL

TrEMBL top hitse value%identityAlignment
A0A0D3BFV5 Uncharacterized protein1.3e-1278.95Show/hide
Query:  VAFEPKP-----TNDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAM
        + FEP        NDPTTSGPF RCTKAITLRSASTKKATPSRSGRIIPSISAGTA+
Subjt:  VAFEPKP-----TNDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAM

A0A385G2C0 Uncharacterized protein5.4e-1490Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL
        NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAM    F+
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL

A0A5N6LJS5 Uncharacterized protein3.0e-2094.64Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFTHDLA
        NDPTT GPF+RCTKAITLRSASTKKATPSRSGRIIPSISAGTAMY+FDFLFTHDLA
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFLFTHDLA

A0A5N6NZI3 Uncharacterized protein2.2e-1592Show/hide
Query:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL
        N+PTTSGPFRRCTKAITLRSASTKKATPSRSGRII SISAGT MY+FDFL
Subjt:  NDPTTSGPFRRCTKAITLRSASTKKATPSRSGRIIPSISAGTAMYVFDFL

C0LEB8 ORF1264.4e-1671.88Show/hide
Query:  DFLFTHD--LAGTGRSKNGVLSGRVNSIIEACWHSSLPSPFRAYPKENPVFLGREYLNRMNRPV
        D+  TH   LA     +  VLSGRVNSII+ CWHSSLPSPFRAYPKENPV LGREYLNR NRPV
Subjt:  DFLFTHD--LAGTGRSKNGVLSGRVNSIIEACWHSSLPSPFRAYPKENPVFLGREYLNRMNRPV

SwissProt top hitse value%identityAlignment
A1EA02 ATP synthase subunit a, chloroplastic5.1e-0991.89Show/hide
Query:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
        G+ +ADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
Subjt:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA

A4QJA3 ATP synthase subunit a, chloroplastic5.1e-0991.89Show/hide
Query:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
        G+ +ADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
Subjt:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA

A4QJI7 ATP synthase subunit a, chloroplastic5.1e-0991.89Show/hide
Query:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
        G+ +ADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
Subjt:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA

Q3V546 ATP synthase subunit a, chloroplastic5.1e-0991.89Show/hide
Query:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
        G+ +ADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
Subjt:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA

Q4FGF8 ATP synthase subunit a, chloroplastic5.1e-0991.89Show/hide
Query:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
        G+ +ADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
Subjt:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA

Arabidopsis top hitse value%identityAlignment
ATCG00150.1 ATPase, F0 complex, subunit A protein3.6e-1091.89Show/hide
Query:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
        G+ +ADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA
Subjt:  GSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGCAGGGAGGATGAAAGACATAAGGTGCGGGGATCCGCAATAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTAGTTCCTATACCTGT
TATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTACGCCTTTATTAGAGTATTATCGTCGACGGCTTTCGCGCAAGTTGCAACATCCCTTGCTTGTTGCTTTCGAGC
CCAAGCCTACGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGA
ATTATTCCAAGTATTTCAGCTGGGACTGCTATGTACGTTTTCGATTTTCTATTCACTCATGATCTGGCCGGCACTGGACGTTCCAAAAATGGGGTACTATCGGGTCGGGT
GAATTCAATAATAGAGGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGATGAACC
GCCCCGTGGTTTGCCGGTGTTCGGCGCTCCCTTCGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAGCAGGGAGGATGAAAGACATAAGGTGCGGGGATCCGCAATAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTAGTTCCTATACCTGT
TATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTACGCCTTTATTAGAGTATTATCGTCGACGGCTTTCGCGCAAGTTGCAACATCCCTTGCTTGTTGCTTTCGAGC
CCAAGCCTACGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGA
ATTATTCCAAGTATTTCAGCTGGGACTGCTATGTACGTTTTCGATTTTCTATTCACTCATGATCTGGCCGGCACTGGACGTTCCAAAAATGGGGTACTATCGGGTCGGGT
GAATTCAATAATAGAGGCCTGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTGTTTCTTGGTCGTGAATATCTGAATAGGATGAACC
GCCCCGTGGTTTGCCGGTGTTCGGCGCTCCCTTCGAACTGA
Protein sequenceShow/hide protein sequence
MNSREDERHKVRGSAIADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQATPLLEYYRRRLSRKLQHPLLVAFEPKPTNDPTTSGPFRRCTKAITLRSASTKKATPSRSGR
IIPSISAGTAMYVFDFLFTHDLAGTGRSKNGVLSGRVNSIIEACWHSSLPSPFRAYPKENPVFLGREYLNRMNRPVVCRCSALPSN