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Clc11G08115 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08115
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S8, chloroplastic
Genome locationClcChr11:7859231..7860184
RNA-Seq ExpressionClc11G08115
SyntenyClc11G08115
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000630 - Ribosomal protein S8
IPR035987 - Ribosomal protein S8 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM91011.1 ribosomal protein S8 [Lagenaria siceraria]7.0e-6396.15Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILN KRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009326025.1 ribosomal protein S8 [Citrullus lanatus]2.4e-6396.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009431592.1 ribosomal protein S8 [Citrullus amarus]7.0e-6396.15Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGI+TDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009525221.1 ribosomal protein S8 [Hodgsonia macrocarpa]7.0e-6396.15Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

YP_009752870.1 ribosomal protein S8 [Baijiania yunnanensis]5.3e-6396.15Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

TrEMBL top hitse value%identityAlignment
A0A1P8LE42 Ribosomal protein S81.2e-6396.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

A0A1P8LEK4 Ribosomal protein S81.2e-6396.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

A0A343A8E6 30S ribosomal protein S8, chloroplastic1.2e-6396.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

A0A7T3QNL9 Ribosomal protein S81.2e-6396.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

X2F6H3 30S ribosomal protein S8, chloroplastic1.2e-6396.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

SwissProt top hitse value%identityAlignment
A0ZZ70 30S ribosomal protein S8, chloroplastic9.2e-5886.15Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I +I TSIRNADMNRKG ++I STNITENIV+ILLREGFI+NVRKHRE NK F VLTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARL+GIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

A7Y3I5 30S ribosomal protein S8, chloroplastic1.3e-5684.62Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I  I TSIRNADM+RK +VRI STNITENIV+ILLREGFIENVRKHRE NK+F+VLTLRHRRNRK PY+ I NLKRISRPGLRIYSNYQ+IP+ILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARL+GIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

Q2L942 30S ribosomal protein S8, chloroplastic3.5e-5786.15Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I +I TSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKHRE NK F VLTLRHRRNRKGP++TILNL+RISRPGLRIYSNYQQIPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARL+GIGGEILC IW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

Q49KW3 30S ribosomal protein S8, chloroplastic1.8e-5886.92Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I +I TSIRNADMNRKG ++I STNITENIVKILLREGFI+NVRKH+E+NK F VLTLRHRRNRKGPY+TILNLKRISRPGLRIYSNYQ+IPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARL+GIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

Q4VZK0 30S ribosomal protein S8, chloroplastic2.0e-6595.38Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I NI TSIRNADMNRKGMVRIP+TNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQ+IPRILGGMG
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTSRGIMTDREARLQGIGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

Arabidopsis top hitse value%identityAlignment
ATCG00770.1 ribosomal protein S85.7e-5583.08Show/hide
Query:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG
        +I +I TSIRNADMNRKG VRI STNITE+IVKILLREGFIENVRKHRE+N+ F +LTLRHRRN+K  YKTILNLKRISRPGLRIYSN Q+IPRILGG+G
Subjt:  SITNIRTSIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMG

Query:  NVILSTSRGIMTDREARLQGIGGEILCYIW
         VILSTS+GIMTDREARL+ IGGEILCYIW
Subjt:  NVILSTSRGIMTDREARLQGIGGEILCYIW

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core1.8e-1687.23Show/hide
Query:  RNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
        + +RWLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+MTKTL
Subjt:  RNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core1.8e-1687.23Show/hide
Query:  RNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
        + +RWLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+MTKTL
Subjt:  RNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTGATTCCATTGGACGGTACCAACGAAATCGAAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTTCGTTCTAATACTCCATCCGAGAGTTATCA
GTATTTATCAAATCTGTTCCTATCTAACGGAACACTATTGGATCAAATGACAAAGACATTGTCTTTTCGGATCCAGCGAAAGCAAAGGCAGCGAAGCTTCAAGGAAGCCC
CTTTTGACTCGACAGTGGTGACAGAGAGCAAGCTACTTTATGGGAGTAAGTGGGAGAGGGCTAAGCCGGAAAGAGAGAGAGCAGCTGGTTCTATAACTAACATAAGAACC
TCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGT
ACGGAAACATCGTGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGAC
CTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCAATGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGA
CTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTGATTCCATTGGACGGTACCAACGAAATCGAAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTTCGTTCTAATACTCCATCCGAGAGTTATCA
GTATTTATCAAATCTGTTCCTATCTAACGGAACACTATTGGATCAAATGACAAAGACATTGTCTTTTCGGATCCAGCGAAAGCAAAGGCAGCGAAGCTTCAAGGAAGCCC
CTTTTGACTCGACAGTGGTGACAGAGAGCAAGCTACTTTATGGGAGTAAGTGGGAGAGGGCTAAGCCGGAAAGAGAGAGAGCAGCTGGTTCTATAACTAACATAAGAACC
TCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGT
ACGGAAACATCGTGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGAC
CTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCAATGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGA
CTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAA
Protein sequenceShow/hide protein sequence
MEFDSIGRYQRNRRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLSFRIQRKQRQRSFKEAPFDSTVVTESKLLYGSKWERAKPERERAAGSITNIRT
SIRNADMNRKGMVRIPSTNITENIVKILLREGFIENVRKHRESNKDFWVLTLRHRRNRKGPYKTILNLKRISRPGLRIYSNYQQIPRILGGMGNVILSTSRGIMTDREAR
LQGIGGEILCYIW