; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G08120 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08120
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome locationClcChr11:7864314..7872758
RNA-Seq ExpressionClc11G08120
SyntenyClc11G08120
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0042773 - ATP synthesis coupled electron transport (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
GO:0048038 - quinone binding (molecular function)
InterPro domainsIPR002128 - NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALF03348.1 NADH dehydrogenase subunit 5 [Cucumis sativus var. hardwickii]1.1e-2798.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

AUW52966.1 NADH dehydrogenase subunit F, partial [Citrullus colocynthis]1.1e-2798.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

QZL38642.1 NADH dehydrogenase subunit F [Citrullus naudinianus]1.1e-2798.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

YP_009317433.1 NADH dehydrogenase subunit 5 [Coccinia grandis]1.1e-2798.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

YP_009326037.1 NADH dehydrogenase subunit 5 [Citrullus lanatus]1.1e-2798.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

TrEMBL top hitse value%identityAlignment
A0A1X9Q1P6 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic5.5e-2898.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

A0A218KG84 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic5.5e-2898.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Q5SF10 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)5.5e-2898.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Q5SF12 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)5.5e-2898.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Q5SF18 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)5.5e-2898.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

SwissProt top hitse value%identityAlignment
A1XGU4 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic4.2e-2583.08Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFA IAC TAGLTAFYMFR+YLLTF+GHLN+ CKNYS K NN LYSIS+W
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

B1A981 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic2.5e-2583.08Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFA+IACSTAGLTAFYMFRIYLLTFDGHLN++ +NYSGK ++S YSIS+W
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Q09FZ9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic4.2e-2583.08Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFR+YLLTF+GHLN++ +NYSGK N+S YSIS+W
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Q2QD43 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.5e-3098.46Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Q9TL56 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic3.2e-2586.15Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTF+GHLN++ +NYSGK N S YSISLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

Arabidopsis top hitse value%identityAlignment
ATCG00840.1 ribosomal protein L23.19.0e-1597.37Show/hide
Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW
        MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHW
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW

ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein6.2e-2481.54Show/hide
Query:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW
        +SKDEILNDS L+SPIFAIIACSTAGLTAFYMFRIYLLTF+GHLN Y  NYSGK + S YS+SLW
Subjt:  FSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLW

ATCG01300.1 ribosomal protein L239.0e-1597.37Show/hide
Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW
        MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHW
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW

ATMG00640.1 hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding3.3e-0988.89Show/hide
Query:  MRWSSTNMHARKMLFAAILSICALSSKKISIYNEEM
        MR S TNM  RKMLFAAILSICALSSKKISIYNEEM
Subjt:  MRWSSTNMHARKMLFAAILSICALSSKKISIYNEEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATGGAGTTCCACGAATATGCACGCTAGAAAGATGCTATTTGCTGCTATTCTATCTATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGAG
GCCACCACTTGGGGTGGGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCAGTCCAGTCGCCTCCTCGAAGTGGCTTGTCAACCACGCTTTCCCTCCCTCA
AAACAATGCTCCTCACCAAAAGCCCTTCCTTGGATTGGGGCAACACAGACCTTTCTCGATGCTTTTTTTGGGGTGACTCACCAACCGACCCAGCAGTGATCGATGACAGA
ATGGTACGAACAAATCCAATGACTTGGATTTGGATTCTTGAGTTCATTATGAGTAATGCATCAAATGTATGTACGAGTAACAATGCTCATGTGAAGCAATGGGATAACTT
CCAGCGCCAGATTCGGCAAAAATCCTTGAATTTGAGTTTCCTCCCGTATTGGTCTGCTCTACTGCAGCTTCTTAGAATTTCCGAGCAATTGGAAGCCGCTTTCGATGAAG
AGGCCGAGAAATTGATATTACGCAATCGTGACTGTCCGCAGAAGCCGGATCAACATCATGACAACGGCATTCTGGAAACTGTTGGGCCAGCCACAATTGGTGTAATGTCT
GGGGAAGAAGACCTAGCCCAGCTTTATTTCCGAGCCATCAATAACTGCCAGATTATCAACCCCATGAATCGTATGTTTGTAACAACAGGGACAGAATTTTCTCAATTCCA
ATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCGATGGATTCCTTATTAACACCGTTTCGAACACAACGAGAACTCTTGCCGATGTTGTAG
CTCTTGTCGCAGCTCTTATTCTTACTGAGAAAGGCGAAGCTGTAGGCGATGCGGGAATAGCTTATAACGTTCCTGTTGGTTTTGAACTCAAATTTCCAGATGGAGGGGAT
AGGGACCAGAAATGCCTTGCTTACGTATCATTGGGAAGTAGATTGTCCCACACTAGCACTTCCGCGTTTTTGATGTATTGCAATGGATTCAGCAAAACTCTTCTTATAAG
GATAGTCTTTTTCTTGATATCTTTGATTAATTTGATCTCCCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTTGG
GATCTGTATATTTTGTGGTTTCAGAAAAAGGAACCGAGGTTATGAGAGTAAGTGGAGTTGGGCGGGCGACTCTCCAGGGCCTCATTCATATCTCGATAGAATCTATAAAG
ATAAATACATGGGCTAATCCTTACTTAATAGTAGGGGAAGAGAGTCCAATCTCTGAAATAGAGCTTAGTCTTTATGTGCAAGTCCCATCAAGTTGCCTTATAAAAGAGGC
TGGCGTCGACCAGCTTTGCGATACGGACGGACACAAAAAAGAACGCTGGCAGCGGAAATGCAAAAGAGAAGAGCAAAGATTCCCGACCCAGAGCATGGCTACTGCGGTAC
CAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAACGCCATTCATCCTCCTTTCATCTCTCCGAATCTACGTGAT
CTAACAAGGATAGATAGAGGCATAGGCTTCAGCAAGGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCACAGCTGGATTAAC
AGCATTTTATATGTTTCGCATCTACTTACTTACTTTTGATGGACATTTAAACCTTTATTGTAAAAACTACAGTGGAAAAACAAATAACTCCCTCTATTCAATATCATTAT
GGGTTCAAATCATTTTGATAATAATAAGTTTGATCTGTTTTACCGAGAAGGTCTACGGTTCGAGTCCGTACAGCGGAAACCTTCCAATCAGAAGAAACTTCCTCTTTGGC
TTTGAAACTATAGAAACAAAAAGGCTACTTACTAGCTTTTCGATAGGAGTTTGTGCGATTCATCTTTGTTTGGTAATGGGTCCCATTGGCGTGCATCCACGGGGGGGTCG
ACGACGGAACGAAGAACTCACTTTCTTACAGCTTTTTCGTACACGTTCACTTACATCACATACACAAGTGCTCTTTGAACCGTGCAATAAGGGAAGAAAATTTATGGATG
GAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGCCA
AAGGTGTGCGTTCGTGAGCCCATGCCGCATATAATTATACTAAGTAATATCTACATTTTCGTACAAATTCCCCAAAAGTTAGTTATAATCCGATCCAACAACAGGGATTC
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGATGGAGTTCCACGAATATGCACGCTAGAAAGATGCTATTTGCTGCTATTCTATCTATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGAG
GCCACCACTTGGGGTGGGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCAGTCCAGTCGCCTCCTCGAAGTGGCTTGTCAACCACGCTTTCCCTCCCTCA
AAACAATGCTCCTCACCAAAAGCCCTTCCTTGGATTGGGGCAACACAGACCTTTCTCGATGCTTTTTTTGGGGTGACTCACCAACCGACCCAGCAGTGATCGATGACAGA
ATGGTACGAACAAATCCAATGACTTGGATTTGGATTCTTGAGTTCATTATGAGTAATGCATCAAATGTATGTACGAGTAACAATGCTCATGTGAAGCAATGGGATAACTT
CCAGCGCCAGATTCGGCAAAAATCCTTGAATTTGAGTTTCCTCCCGTATTGGTCTGCTCTACTGCAGCTTCTTAGAATTTCCGAGCAATTGGAAGCCGCTTTCGATGAAG
AGGCCGAGAAATTGATATTACGCAATCGTGACTGTCCGCAGAAGCCGGATCAACATCATGACAACGGCATTCTGGAAACTGTTGGGCCAGCCACAATTGGTGTAATGTCT
GGGGAAGAAGACCTAGCCCAGCTTTATTTCCGAGCCATCAATAACTGCCAGATTATCAACCCCATGAATCGTATGTTTGTAACAACAGGGACAGAATTTTCTCAATTCCA
ATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCGATGGATTCCTTATTAACACCGTTTCGAACACAACGAGAACTCTTGCCGATGTTGTAG
CTCTTGTCGCAGCTCTTATTCTTACTGAGAAAGGCGAAGCTGTAGGCGATGCGGGAATAGCTTATAACGTTCCTGTTGGTTTTGAACTCAAATTTCCAGATGGAGGGGAT
AGGGACCAGAAATGCCTTGCTTACGTATCATTGGGAAGTAGATTGTCCCACACTAGCACTTCCGCGTTTTTGATGTATTGCAATGGATTCAGCAAAACTCTTCTTATAAG
GATAGTCTTTTTCTTGATATCTTTGATTAATTTGATCTCCCCGTTGTTGATTGGAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTTGG
GATCTGTATATTTTGTGGTTTCAGAAAAAGGAACCGAGGTTATGAGAGTAAGTGGAGTTGGGCGGGCGACTCTCCAGGGCCTCATTCATATCTCGATAGAATCTATAAAG
ATAAATACATGGGCTAATCCTTACTTAATAGTAGGGGAAGAGAGTCCAATCTCTGAAATAGAGCTTAGTCTTTATGTGCAAGTCCCATCAAGTTGCCTTATAAAAGAGGC
TGGCGTCGACCAGCTTTGCGATACGGACGGACACAAAAAAGAACGCTGGCAGCGGAAATGCAAAAGAGAAGAGCAAAGATTCCCGACCCAGAGCATGGCTACTGCGGTAC
CAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAACGCCATTCATCCTCCTTTCATCTCTCCGAATCTACGTGAT
CTAACAAGGATAGATAGAGGCATAGGCTTCAGCAAGGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCACAGCTGGATTAAC
AGCATTTTATATGTTTCGCATCTACTTACTTACTTTTGATGGACATTTAAACCTTTATTGTAAAAACTACAGTGGAAAAACAAATAACTCCCTCTATTCAATATCATTAT
GGGTTCAAATCATTTTGATAATAATAAGTTTGATCTGTTTTACCGAGAAGGTCTACGGTTCGAGTCCGTACAGCGGAAACCTTCCAATCAGAAGAAACTTCCTCTTTGGC
TTTGAAACTATAGAAACAAAAAGGCTACTTACTAGCTTTTCGATAGGAGTTTGTGCGATTCATCTTTGTTTGGTAATGGGTCCCATTGGCGTGCATCCACGGGGGGGTCG
ACGACGGAACGAAGAACTCACTTTCTTACAGCTTTTTCGTACACGTTCACTTACATCACATACACAAGTGCTCTTTGAACCGTGCAATAAGGGAAGAAAATTTATGGATG
GAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGCCA
AAGGTGTGCGTTCGTGAGCCCATGCCGCATATAATTATACTAAGTAATATCTACATTTTCGTACAAATTCCCCAAAAGTTAGTTATAATCCGATCCAACAACAGGGATTC
TTAG
Protein sequenceShow/hide protein sequence
MRWSSTNMHARKMLFAAILSICALSSKKISIYNEEMRPPLGVGNGSAHMHHLMKALQSSRLLEVACQPRFPSLKTMLLTKSPSLDWGNTDLSRCFFWGDSPTDPAVIDDR
MVRTNPMTWIWILEFIMSNASNVCTSNNAHVKQWDNFQRQIRQKSLNLSFLPYWSALLQLLRISEQLEAAFDEEAEKLILRNRDCPQKPDQHHDNGILETVGPATIGVMS
GEEDLAQLYFRAINNCQIINPMNRMFVTTGTEFSQFQSTRRIVSILLSNISGNPDGFLINTVSNTTRTLADVVALVAALILTEKGEAVGDAGIAYNVPVGFELKFPDGGD
RDQKCLAYVSLGSRLSHTSTSAFLMYCNGFSKTLLIRIVFFLISLINLISPLLIGNWKRIFERNDCLITVLILGSVYFVVSEKGTEVMRVSGVGRATLQGLIHISIESIK
INTWANPYLIVGEESPISEIELSLYVQVPSSCLIKEAGVDQLCDTDGHKKERWQRKCKREEQRFPTQSMATAVPIKKTVVATGRRNGFWNLLTFSKNAIHPPFISPNLRD
LTRIDRGIGFSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLNLYCKNYSGKTNNSLYSISLWVQIILIIISLICFTEKVYGSSPYSGNLPIRRNFLFG
FETIETKRLLTSFSIGVCAIHLCLVMGPIGVHPRGGRRRNEELTFLQLFRTRSLTSHTQVLFEPCNKGRKFMDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWP
KVCVREPMPHIIILSNIYIFVQIPQKLVIIRSNNRDS