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Clc11G08295 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08295
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr11:8207980..8209197
RNA-Seq ExpressionClc11G08295
SyntenyClc11G08295
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033478.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.6e-1551.04Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL
        G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GRP+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Subjt:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-1650.52Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI
        G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GRP+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Subjt:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1551.04Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL
        G+ VCY CGQ RHF+++CPQL   +  D+  G              EGTSGA  +G +GRP+QQ KVY MTQ+EAED PDVIT TI IC +P   L
Subjt:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-1650.52Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI
        G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GRP+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Subjt:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI

TYK22548.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.6e-1551.04Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL
        G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GRP+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Subjt:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL

TrEMBL top hitse value%identityAlignment
A0A5A7SSD5 Retrotransposon protein, putative, Ty3-gypsy subclass7.5e-1651.04Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL
        G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GRP+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Subjt:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL

A0A5A7T7M6 Reverse transcriptase4.4e-1650.52Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI
        G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GRP+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Subjt:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI

A0A5A7V4W9 Reverse transcriptase5.8e-1651.04Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL
        G+ VCY CGQ RHF+++CPQL   +  D+  G              EGTSGA  +G +GRP+QQ KVY MTQ+EAED PDVIT TI IC +P   L
Subjt:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL

A0A5D3BTP3 Reverse transcriptase4.4e-1650.52Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI
        G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GRP+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Subjt:  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI

A0A5D3DGG2 Retrotransposon protein, putative, Ty3-gypsy subclass7.5e-1651.04Show/hide
Query:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL
        G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GRP+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Subjt:  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGTATAGAGATTGTTGGGAGATTGTTGGATAGATGTCTCACTGGCTTTAGTGCAAGCCGGAGATTTGGATCTAATGTCTGCTACAACTGTGGGCAGACAAGACA
TTTCAGGAGAGAGTGTCCTCAGTTGATAGATGAGGACAAGGCAGATGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTAT
ATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAATGTTTGATCTATCATAGGAATGCAAATGAG
GCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAG
TAGTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGTATAGAGATTGTTGGGAGATTGTTGGATAGATGTCTCACTGGCTTTAGTGCAAGCCGGAGATTTGGATCTAATGTCTGCTACAACTGTGGGCAGACAAGACA
TTTCAGGAGAGAGTGTCCTCAGTTGATAGATGAGGACAAGGCAGATGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTAT
ATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAATGTTTGATCTATCATAGGAATGCAAATGAG
GCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAG
TAGTTCTTGA
Protein sequenceShow/hide protein sequence
MLSIEIVGRLLDRCLTGFSASRRFGSNVCYNCGQTRHFRRECPQLIDEDKADGEGTSGATLRGLGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLIYHRNANE
AGGMENHAHGHAEGVGRPGWATTHAYGRVSWVVWGGSSS