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Clc11G08520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCysteine and histidine-rich domain-containing protein
Genome locationClcChr11:9761815..9772696
RNA-Seq ExpressionClc11G08520
SyntenyClc11G08520
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007051 - CHORD domain
IPR043316 - Cysteine and histidine-rich domain-containing protein RAR1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038891148.1 cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Benincasa hispida]1.2e-8491.36Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CK GKHTTEKPVLTK TTAVKKPSPTPV+SMTN LGKESCARCQQGFFCSDHGTQVKGNNKSINE S IPAAS+ +SQ PPAPAKKI+GINEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGKTFTEMENHDTAC YHPGPAIFHDRLRGWKCCNIHVKEFDEFMEI PCTRGWHNADPA
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

XP_038891150.1 cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Benincasa hispida]2.1e-8491.88Show/hide
Query:  CKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKNKG
        CK GKHTTEKPVLTK TTAVKKPSPTPV+SMTN LGKESCARCQQGFFCSDHGTQVKGNNKSINE S IPAAS+ +SQ PPAPAKKI+GINEPQICKNKG
Subjt:  CKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKNKG

Query:  CGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        CGKTFTEMENHDTAC YHPGPAIFHDRLRGWKCCNIHVKEFDEFMEI PCTRGWHNADPA
Subjt:  CGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

XP_038891151.1 cysteine and histidine-rich domain-containing protein RAR1 isoform X3 [Benincasa hispida]2.1e-8491.88Show/hide
Query:  CKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKNKG
        CK GKHTTEKPVLTK TTAVKKPSPTPV+SMTN LGKESCARCQQGFFCSDHGTQVKGNNKSINE S IPAAS+ +SQ PPAPAKKI+GINEPQICKNKG
Subjt:  CKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKNKG

Query:  CGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        CGKTFTEMENHDTAC YHPGPAIFHDRLRGWKCCNIHVKEFDEFMEI PCTRGWHNADPA
Subjt:  CGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

XP_038891152.1 cysteine and histidine-rich domain-containing protein RAR1 isoform X4 [Benincasa hispida]1.2e-8491.36Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CK GKHTTEKPVLTK TTAVKKPSPTPV+SMTN LGKESCARCQQGFFCSDHGTQVKGNNKSINE S IPAAS+ +SQ PPAPAKKI+GINEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGKTFTEMENHDTAC YHPGPAIFHDRLRGWKCCNIHVKEFDEFMEI PCTRGWHNADPA
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

XP_038891153.1 cysteine and histidine-rich domain-containing protein RAR1 isoform X5 [Benincasa hispida]5.4e-8584.07Show/hide
Query:  LSTTFTSPLVNVIVRFGQSTPICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQ
        L  T    LVN ++R       CK GKHTTEKPVLTK TTAVKKPSPTPV+SMTN LGKESCARCQQGFFCSDHGTQVKGNNKSINE S IPAAS+ +SQ
Subjt:  LSTTFTSPLVNVIVRFGQSTPICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQ

Query:  VPPAPAKKIIGINEPQICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
         PPAPAKKI+GINEPQICKNKGCGKTFTEMENHDTAC YHPGPAIFHDRLRGWKCCNIHVKEFDEFMEI PCTRGWHNADPA
Subjt:  VPPAPAKKIIGINEPQICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

TrEMBL top hitse value%identityAlignment
A0A0A0LKX0 Uncharacterized protein4.2e-7582.72Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CKTGKHTTEKPVLTKPTT VKKPSP   SSMTN LGKE CARCQQGFFCSDHGTQ+KGNNKSINE S IP ASNTD+Q P    KK IG+NEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGKTFTEMENHDTAC YHPGP +FHDR+RGW+CCNIHVKEFDEFM+I PC+RGWHNA PA
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

A0A1S3B5A5 LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR19.0e-7885.8Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CKTGKHTTEKPVLTKPTTAVKK SP P+SSMTN LGKESCARCQQGFFCSDHGTQ+KG NKSINE S IP ASNTD+Q P  P KK IGINEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGKTFTEMENH+TAC YHPGP +FHDRLRGW+CCNIHVKEFDEFMEI PC+RGWHNADPA
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

A0A6J1DZH1 cysteine and histidine-rich domain-containing protein RAR17.4e-8084.57Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CKTGKHTTE+PVL+KP+TAVKKPSP PVSS+TN LGKESCARC+QGFFCSDHG+QVKG+NKS NEAS +P  +N DSQ  PAPAKKIIGINEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGKTFTEMENHDTAC +HPGP +FHDRLRGWKCC+IHVKEFDEFMEI PCTRGWHNADPA
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

A0A6J1H1M2 cysteine and histidine-rich domain-containing protein RAR13.9e-8185.8Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CKTGKHTTEKPVLTKPTT+VKKPSP PVSSMTN LGKESCARC+QGFFCSDHG+QV+GNNKSIN+AS +P ASN DSQV PAPAKK +GINEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGKTFTEM+NHDTAC YHPGPA+FHDRLRGWKCC++HVKEFDEFMEI PCT GWHNAD A
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

A0A6J1K2T7 cysteine and histidine-rich domain-containing protein RAR17.4e-8084.57Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN
        P CKTGKHTTEKPVLTKPTT+VKKPSP PVSSMTN LGKESCARC+QGFFCSDHG+QVKGNNKSIN+ S +P ASN DSQV PAPAKK +GINEPQICKN
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAPAKKIIGINEPQICKN

Query:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        KGCGK FTEM+NHDTAC YHPGPA+FHDRLRGWKCC++HVKEFDEFMEI PCT GWH AD A
Subjt:  KGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

SwissProt top hitse value%identityAlignment
A9YUB1 Cysteine and histidine-rich domain-containing protein 19.4e-1646.88Show/hide
Query:  ICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNAD
        +C N+GCG+ F    N D AC YHPG  +FHD L+GW CC     +F +F+ I  CT+G HN++
Subjt:  ICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNAD

Q29RL2 Cysteine and histidine-rich domain-containing protein 11.2e-1546.88Show/hide
Query:  ICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNAD
        +C N+GCG+ F    N D AC YHPG  +FHD L+GW CC     +F +F+ I  CT+G HN++
Subjt:  ICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNAD

Q6EPW7 Cysteine and histidine-rich domain-containing protein RAR15.7e-5358.48Show/hide
Query:  PICKTGKHTTEKPVL----TKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVP---PA--PAKKIIG
        P CKTGKHTTEKP+     TKP+ AV      PV +    +G ++C+RC+QGFFCSDHG+Q K           IP A++  + VP   PA  P KK I 
Subjt:  PICKTGKHTTEKPVL----TKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVP---PA--PAKKIIG

Query:  INEPQICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA
        +NEP++CKNKGCGKT+ E +NHD AC YHPGPA+F DR+RGWKCC+IHVKEFDEFMEI PCT+GWHNAD A
Subjt:  INEPQICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA

Q7T3F7 Cysteine and histidine-rich domain-containing protein 11.2e-1548.44Show/hide
Query:  ICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNAD
        +C NKGCG+ F   +N D AC YHPG  +FHD L+GW CC     +F +F+ I  CT+G HN +
Subjt:  ICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNAD

Q9SE33 Cysteine and histidine-rich domain-containing protein RAR17.4e-5359.15Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSM-TNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAP--AKKIIGINEPQI
        P CKTGKHTTEKPVL K  +  K P   P SS   N   K+SC+RC+QGFFCSDHG+Q K   + I +    P  +  +   P AP   K +I IN+PQ+
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSM-TNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAP--AKKIIGINEPQI

Query:  CKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADP
        CKNKGCG+TF E +NH+TAC +HPGPA+FHDRLRGWKCC++HVKEFDEFMEI PCT+GWH++ P
Subjt:  CKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADP

Arabidopsis top hitse value%identityAlignment
AT5G51700.1 protein binding;zinc ion binding5.3e-5459.15Show/hide
Query:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSM-TNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAP--AKKIIGINEPQI
        P CKTGKHTTEKPVL K  +  K P   P SS   N   K+SC+RC+QGFFCSDHG+Q K   + I +    P  +  +   P AP   K +I IN+PQ+
Subjt:  PICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSM-TNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTDSQVPPAP--AKKIIGINEPQI

Query:  CKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADP
        CKNKGCG+TF E +NH+TAC +HPGPA+FHDRLRGWKCC++HVKEFDEFMEI PCT+GWH++ P
Subjt:  CKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACTTCGGCTTTAGTGAGAGTGGCATCTCCTCTAAGCACTACCTTCACTTCTCCTCTGGTAAACGTCATTGTGAGGTTCGGCCAGTCTACTCCCATATGCAAGAC
TGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGCTGTAAAGAAGCCAAGTCCAACTCCTGTGTCTTCCATGACAAATAGATTAGGGAAAGAGTCAT
GTGCTAGGTGCCAGCAAGGTTTCTTTTGTTCAGACCATGGTACGCAAGTCAAAGGAAATAACAAATCTATTAATGAAGCCTCAATTATACCTGCTGCAAGCAATACTGAT
TCTCAGGTCCCTCCTGCTCCAGCAAAAAAAATAATCGGTATAAATGAACCTCAGATCTGCAAGAATAAGGGGTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACAC
TGCCTGCATTTACCATCCTGGACCTGCTATTTTTCATGATCGGTTGAGAGGGTGGAAATGTTGCAACATTCACGTTAAGGAATTTGATGAGTTCATGGAAATTCATCCCT
GCACTCGCGGTTGGCACAATGCTGATCCAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACTTCGGCTTTAGTGAGAGTGGCATCTCCTCTAAGCACTACCTTCACTTCTCCTCTGGTAAACGTCATTGTGAGGTTCGGCCAGTCTACTCCCATATGCAAGAC
TGGAAAACATACAACAGAAAAGCCAGTTTTGACCAAGCCAACCACTGCTGTAAAGAAGCCAAGTCCAACTCCTGTGTCTTCCATGACAAATAGATTAGGGAAAGAGTCAT
GTGCTAGGTGCCAGCAAGGTTTCTTTTGTTCAGACCATGGTACGCAAGTCAAAGGAAATAACAAATCTATTAATGAAGCCTCAATTATACCTGCTGCAAGCAATACTGAT
TCTCAGGTCCCTCCTGCTCCAGCAAAAAAAATAATCGGTATAAATGAACCTCAGATCTGCAAGAATAAGGGGTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACAC
TGCCTGCATTTACCATCCTGGACCTGCTATTTTTCATGATCGGTTGAGAGGGTGGAAATGTTGCAACATTCACGTTAAGGAATTTGATGAGTTCATGGAAATTCATCCCT
GCACTCGCGGTTGGCACAATGCTGATCCAGCATAACTAAACAACATAGCTAGATAAGGAGCATATTCGAAGCATGAAATGAAGAAAATGTCTTCTTCAACATATGCGTAT
CAGTAATTTTCTCTCCGCATAACAACAATTTTGAACTAATTTTAAATAATGCGGAGTTGTAGTCACTTACTGATTTGAAATCTTAGATCCTTATCTATTCATAACAAGCT
TTAGGAAGAATGACTATTTTCTGGTGATCATATCTCTCTTTTAAATTATTCCATAAGATACATGATATTTTTATTGTTAGATATTTCATCTTCAACCTCTTGTGGAGATG
ATGACGAAGGAAAATCATAGCTTTTGTTTTTTTCCTGAATTGATGTTGTATTTCTCTTTAATTGTTTCTCCTAGGTTCATTGC
Protein sequenceShow/hide protein sequence
MVTSALVRVASPLSTTFTSPLVNVIVRFGQSTPICKTGKHTTEKPVLTKPTTAVKKPSPTPVSSMTNRLGKESCARCQQGFFCSDHGTQVKGNNKSINEASIIPAASNTD
SQVPPAPAKKIIGINEPQICKNKGCGKTFTEMENHDTACIYHPGPAIFHDRLRGWKCCNIHVKEFDEFMEIHPCTRGWHNADPA