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Clc11G08690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationClcChr11:10259372..10260283
RNA-Seq ExpressionClc11G08690
SyntenyClc11G08690
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP67622.1 Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]1.0e-1254.67Show/hide
Query:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        +L   E L A+NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++PNRP YRTNPQE +EI
Subjt:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
KYP77646.1 Transposon Ty3-I Gag-Pol polyprotein, partial [Cajanus cajan]3.0e-1254.67Show/hide
Query:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        +L   E L A NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++PNRP YRTNPQE +EI
Subjt:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
XP_016733955.1 uncharacterized protein LOC107944659 [Gossypium hirsutum]1.7e-1255.56Show/hide
Query:  MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        ++GTNE   A   S   L     +EF D+F KE+ SGLPP  GIEH+IDF+PR AIPNRPTYR+NP+E +E+
Subjt:  MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
XP_022158760.1 uncharacterized protein LOC111025226 [Momordica charantia]1.0e-1279.17Show/hide
Query:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        EFE+LFPKEM SGLPP  GIEHKIDFIP   IPNRP YRTNP E EEI
Subjt:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
XP_022636128.1 uncharacterized protein LOC106761339 [Vigna radiata var. radiata]1.0e-1275Show/hide
Query:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        EF+DLFPKE+  GLPP  GIEH+IDFIPR  +PNRPTYRTNPQE +EI
Subjt:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
TrEMBL top hitse value%identityAlignment
A0A151TKN6 Transposon Ty3-I Gag-Pol polyprotein4.9e-1354.67Show/hide
Query:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        +L   E L A+NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++PNRP YRTNPQE +EI
Subjt:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
A0A151UE82 Transposon Ty3-I Gag-Pol polyprotein (Fragment)1.4e-1254.67Show/hide
Query:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        +L   E L A NF    L  G     +EF+DLFPKE+ SGLPP  GIEH+ID +P  ++PNRP YRTNPQE +EI
Subjt:  MLGTNEKLKASNFSASLLKIG---RWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
A0A1U8N4Q4 uncharacterized protein LOC1079446598.4e-1355.56Show/hide
Query:  MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        ++GTNE   A   S   L     +EF D+F KE+ SGLPP  GIEH+IDF+PR AIPNRPTYR+NP+E +E+
Subjt:  MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
A0A3Q0EWL0 uncharacterized protein LOC1067613394.9e-1375Show/hide
Query:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        EF+DLFPKE+  GLPP  GIEH+IDFIPR  +PNRPTYRTNPQE +EI
Subjt:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
A0A6J1DWQ2 uncharacterized protein LOC1110252264.9e-1379.17Show/hide
Query:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
        EFE+LFPKEM SGLPP  GIEHKIDFIP   IPNRP YRTNP E EEI
Subjt:  EFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGGTACCAATGAGAAACTAAAAGCTTCAAACTTCTCAGCTTCACTTTTAAAGATTGGACGTTGGGAGGAATTTGAAGACTTATTCCCCAAGGAGATGCTTAGTGG
GTTACCACCACCTATGGGGATTGAGCATAAGATTGATTTCATTCCGAGAGTGGCCATTCCAAACCGTCCAACATATAGGACTAATCCACAGGAGGCCGAAGAGATATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGGTACCAATGAGAAACTAAAAGCTTCAAACTTCTCAGCTTCACTTTTAAAGATTGGACGTTGGGAGGAATTTGAAGACTTATTCCCCAAGGAGATGCTTAGTGG
GTTACCACCACCTATGGGGATTGAGCATAAGATTGATTTCATTCCGAGAGTGGCCATTCCAAACCGTCCAACATATAGGACTAATCCACAGGAGGCCGAAGAGATATAA
Protein sequenceShow/hide protein sequence
MLGTNEKLKASNFSASLLKIGRWEEFEDLFPKEMLSGLPPPMGIEHKIDFIPRVAIPNRPTYRTNPQEAEEI