CuGenDBv2

Gene ID	Clc11G08790
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X6
Genome location	ClcChr11:10644743..10645409
RNA-Seq Expression	Clc11G08790
Synteny	Clc11G08790
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domains	IPR039686 - FANCM/Mph1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_038884535.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]

5.6e-78

89.29

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG
        QTFPSR H VMHSCRTMVLIDTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG

XP_038884540.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X6 [Benincasa hispida]

5.6e-78

89.29

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG
        QTFPSR H VMHSCRTMVLIDTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG

XP_038884541.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Benincasa hispida]

5.6e-78

89.29

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG
        QTFPSR H VMHSCRTMVLIDTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG

XP_038884542.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X8 [Benincasa hispida]

5.6e-78

89.29

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG
        QTFPSR H VMHSCRTMVLIDTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG

XP_038884544.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X9 [Benincasa hispida]

5.6e-78

89.29

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVR GKK+KDD AVQITSF++KLTDTETELLLKYFHPCEDAWRPSLIAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG
        QTFPSR H VMHSCRTMVLIDTMQHLQ LH       FSVQRGWIQEK CIREL EAGQVE CSSKRG
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLH-------FSVQRGWIQEKPCIRELLEAGQVENCSSKRG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FGG7 DEAD-box ATP-dependent RNA helicase FANCM isoform X4

1.2e-70

78.49

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+HAVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP
        QTFPSRTH V HS RTM+LIDTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP

A0A6J1FGT9 DEAD-box ATP-dependent RNA helicase FANCM isoform X1

1.2e-70

78.49

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+HAVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP
        QTFPSRTH V HS RTM+LIDTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP

A0A6J1FGU4 DEAD-box ATP-dependent RNA helicase FANCM isoform X6

1.2e-70

78.49

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+HAVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP
        QTFPSRTH V HS RTM+LIDTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP

A0A6J1FLC0 DEAD-box ATP-dependent RNA helicase FANCM isoform X5

1.2e-70

78.49

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+HAVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP
        QTFPSRTH V HS RTM+LIDTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP

A0A6J1FMD9 DEAD-box ATP-dependent RNA helicase FANCM isoform X7

1.2e-70

78.49

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF
        M+KQTTSKSIKKHMQNGGINSFNFHAS RMIPHTIKPEVQFVKLSIKQFVR GKK+KD+HAVQITSFKNKLT+TETELLLKYFHPCEDAW+PS+IAFPHF
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHF

Query:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP
        QTFPSRTH V HS RTM+LIDTMQHLQGL+FS   +   +QEKPCIREL EA Q+  C   + G    +S P
Subjt:  QTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFS--VQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLP

SwissProt top hits

e value

%identity

Alignment

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM

1.6e-38

59.26

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPH
        M+KQ + ++IKKHM+NGG NSFNFH S RMIPH  KPEVQ V+ SIKQFV  GKK+++++A +  +F+ KLT  ET +L KY+ +P E+  R SLIAFPH
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPH

Query:  FQTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFSVQ
        FQT PS+ H+VMHS +T +LID MQHLQ   FS Q
Subjt:  FQTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFSVQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G35530.1 DEAD/DEAH box RNA helicase family protein

3.7e-27

57.14

Show/hide

Query:  IPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLIDTMQHLQGL
        IPH  KPEVQ V+ SIKQFV  GKK+++++A +  +F+ KLT  ET +L KY+ +P E+  R SLIAFPHFQT PS+ H+VMHS +T +LID MQHLQ  
Subjt:  IPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPHFQTFPSRTHRVMHSCRTMVLIDTMQHLQGL

Query:  HFSVQ
         FS Q
Subjt:  HFSVQ

AT1G35530.2 DEAD/DEAH box RNA helicase family protein

1.1e-39

59.26

Show/hide

Query:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPH
        M+KQ + ++IKKHM+NGG NSFNFH S RMIPH  KPEVQ V+ SIKQFV  GKK+++++A +  +F+ KLT  ET +L KY+ +P E+  R SLIAFPH
Subjt:  MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYF-HPCEDAWRPSLIAFPH

Query:  FQTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFSVQ
        FQT PS+ H+VMHS +T +LID MQHLQ   FS Q
Subjt:  FQTFPSRTHRVMHSCRTMVLIDTMQHLQGLHFSVQ

Sequences

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CDS sequence

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ATGAAAAAGCAAACAACAAGCAAGTCTATAAAGAAACACATGCAAAATGGGGGAATAAATAGCTTCAACTTTCATGCTAGCTCTAGAATGATTCCACATACTATC
AAACCAGAAGTCCAGTTTGTTAAGCTGTCTATCAAACAATTTGTTCGCCTTGGAAAGAAAATGAAAGATGATCATGCTGTTCAGATAACATCATTTAAGAACAAG
CTAACTGATACTGAGACTGAGTTACTTCTCAAGTATTTCCATCCTTGTGAAGACGCATGGAGGCCGTCCCTTATTGCCTTTCCTCACTTCCAGACTTTTCCCTCA
AGAACCCATCGAGTAATGCATTCATGTAGAACAATGGTTCTAATTGACACAATGCAACACTTGCAAGGACTGCATTTCTCTGTTCAGCGTGGTTGGATTCAGGAG
AAACCATGCATTAGAGAACTATTAGAAGCAGGCCAGGTTGAAAACTGTAGCAGCAAAAGAGGTGGGGATTTCTTTTTGATTTCATTGCCTGCATAA

mRNA sequence

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Protein sequence

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MKKQTTSKSIKKHMQNGGINSFNFHASSRMIPHTIKPEVQFVKLSIKQFVRLGKKMKDDHAVQITSFKNKLTDTETELLLKYFHPCEDAWRPSLIAFPHFQTFPS
RTHRVMHSCRTMVLIDTMQHLQGLHFSVQRGWIQEKPCIRELLEAGQVENCSSKRGGDFFLISLPA

Clc11G08790 (gene) of Watermelon (cordophanus) v2 genome