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Clc11G08820 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G08820
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L18-like
Genome locationClcChr11:10683795..10685654
RNA-Seq ExpressionClc11G08820
SyntenyClc11G08820
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441144.1 PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]1.6e-1278.69Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +AK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

XP_022152485.1 uncharacterized protein LOC111020202 [Momordica charantia]6.5e-1171.88Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNPAHAK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

XP_022993255.1 uncharacterized protein LOC111489327 [Cucurbita maxima]1.3e-1479.69Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNPAH K
Subjt:  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

XP_023521951.1 uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]1.7e-1173.44Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTAISSS+PS +SV S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNPAHAK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

XP_023550056.1 uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo]1.7e-1174.24Show/hide
Query:  MAFTAISSSLP--SCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTAISSSLP  S SSVPS++SFQ PS+P    QKSSSLSW+SSFPH++ISRGSP  SSNPAH K
Subjt:  MAFTAISSSLP--SCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

TrEMBL top hitse value%identityAlignment
A0A1S3B2Q8 50S ribosomal protein L18-like7.5e-1378.69Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +AK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

A0A6J1DE20 uncharacterized protein LOC1110202023.2e-1171.88Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNPAHAK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

A0A6J1HH86 uncharacterized protein LOC1114640454.1e-1171.88Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTAISSS+PS + V S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNPAHAK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

A0A6J1JHY7 uncharacterized protein LOC1114871533.2e-1174.6Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQWPSTPL--QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAFTAISSS+PS +SV S+LS Q  STP   QKSSSLSW+SSFP +S+SRGSPF SSNPAHAK
Subjt:  MAFTAISSSLPSCSSVPSLLSFQWPSTPL--QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

A0A6J1JY30 uncharacterized protein LOC1114893276.2e-1579.69Show/hide
Query:  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK
        MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNPAH K
Subjt:  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNPAHAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCT
CTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGT
GAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTC
ATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCT
TTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGAT
GCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACC
AAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAG
AAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCG
TCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATA
TCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGAC
AGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTC
TTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATA
GAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGA
GATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTT
GAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA
Protein sequenceShow/hide protein sequence
MMAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAKNTACSHFCENSRAVIMAGEDRNDCSMVYRVLNYFLLRSRSIDF
IAIVEQCPSLKLLPGPVIMGLASHMDDRICAKLQPLAFLPFEARDMIEQGKQDGLWRLVVKKKEGKGSLDAGAGELLDSDGRDDEDEAVVFCRGDERGGGVGGLT
KGEVWLSGGLKVEEGKELLGGEGVGGRRDVVYGKEK