CuGenDBv2

Gene ID	Clc11G09010
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase domain-containing protein
Genome location	ClcChr11:11067367..11074689
RNA-Seq Expression	Clc11G09010
Synteny	Clc11G09010
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036886.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]

1.1e-08

40.54

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Query:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI
        R  RV WD LLW GGNIP HSF AWLA++DR+                           G R  L+R  W         ERNH LHGG  R   ++ HLI
Subjt:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI

Query:  PLVVRARAVSW
           +RARA SW
Subjt:  PLVVRARAVSW

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

1.7e-12

48.91

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Query:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWGE--------------------ERNHHLHGGSPRAASLILHLIPLVVRARAVSW
        +V WD LLW GGNIP +SF AWLA++DRLGTRD L+R+ E                    ERNH LHGG  R   +I HLI   +RAR  SW
Subjt:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWGE--------------------ERNHHLHGGSPRAASLILHLIPLVVRARAVSW

KAE8646071.1 hypothetical protein Csa_016045, partial [Cucumis sativus]

1.3e-09

66.1

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Query:  YALSRVVGLFVRLLVLNLFSDFDRLRICIRRSELRPNKVSNLHSIQRRGDFCSSLETRG
        + L  +  + +  LVLNLFSDFDRLR CI RSELR N+VSNLH IQR G FCSSLET G
Subjt:  YALSRVVGLFVRLLVLNLFSDFDRLRICIRRSELRPNKVSNLHSIQRRGDFCSSLETRG

TYJ96685.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]

1.1e-08

40.54

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Query:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI
        R  RV WD LLW GGNIP HSF AWLA++DR+                           G R  L+R  W         ERNH LHGG  R   ++ HLI
Subjt:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI

Query:  PLVVRARAVSW
           +RARA SW
Subjt:  PLVVRARAVSW

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]

2.8e-07

74.36

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Query:  VRVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRW
        +RV W  LLW GGNIP HSF AWLA+RDRLGTRD L RW
Subjt:  VRVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7A2 Uncharacterized protein

6.5e-10

66.1

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Query:  YALSRVVGLFVRLLVLNLFSDFDRLRICIRRSELRPNKVSNLHSIQRRGDFCSSLETRG
        + L  +  + +  LVLNLFSDFDRLR CI RSELR N+VSNLH IQR G FCSSLET G
Subjt:  YALSRVVGLFVRLLVLNLFSDFDRLRICIRRSELRPNKVSNLHSIQRRGDFCSSLETRG

A0A5A7T440 Zf-RVT domain-containing protein

5.5e-09

40.54

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Query:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI
        R  RV WD LLW GGNIP HSF AWLA++DR+                           G R  L+R  W         ERNH LHGG  R   ++ HLI
Subjt:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI

Query:  PLVVRARAVSW
           +RARA SW
Subjt:  PLVVRARAVSW

A0A5A7UP65 Reverse transcriptase

2.3e-07

73.68

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Query:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRW
        RV WD LLW GGNIP HSF AWLA++DRLGTRD  +RW
Subjt:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRW

A0A5A7UV01 F17F8.5

8.2e-13

48.91

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Query:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWGE--------------------ERNHHLHGGSPRAASLILHLIPLVVRARAVSW
        +V WD LLW GGNIP +SF AWLA++DRLGTRD L+R+ E                    ERNH LHGG  R   +I HLI   +RAR  SW
Subjt:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWGE--------------------ERNHHLHGGSPRAASLILHLIPLVVRARAVSW

A0A5D3BDZ6 Zf-RVT domain-containing protein

5.5e-09

40.54

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Query:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI
        R  RV WD LLW GGNIP HSF AWLA++DR+                           G R  L+R  W         ERNH LHGG  R   ++ HLI
Subjt:  REVRVSWDHLLWFGGNIPWHSFYAWLAVRDRL---------------------------GTRDWLYR--W-------GEERNHHLHGGSPRAASLILHLI

Query:  PLVVRARAVSW
           +RARA SW
Subjt:  PLVVRARAVSW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.3e-05

48.72

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Query:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWG
        RV W   +WF G IP H+F AW+ +R RL T+D +  WG
Subjt:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWG

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.6e-06

48.72

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Query:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWG
        +V W   +WF G IP H+F +W+ +R RL TRD L  WG
Subjt:  RVSWDHLLWFGGNIPWHSFYAWLAVRDRLGTRDWLYRWG

Sequences

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CDS sequence

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ATGGAAGTAGATCGAGAAGGGAAAGAAGTGAAACGCATAGGAAAAGATATAAGCATTGGCGTTGAATACTATAGCAAATTGAGTAACGCATTGACTATTAGCAAGGAATG
TTCACGAGTGTTGGAAAGTGGAAGCGTGACATGTGGCAAACAAGTGGCAAAAGGAGAGGAGAAGTTGGATGGCAAGCTCCCTATAAATAGAACCTTGAGGGAAAAGGAGC
GACTGATGACTCTGAAAGAAGAATTCTGGAGAGAAAGGAAAGAAAGAAGGGTAGGGTTTGCGGTAGTTATCAATTTTGTGTTGAAGGGCAGGGTTGCGTTCAACAGAGCT
GATAGAGGAAAATGGAGCCTTGCATTTCTGAGATTAGAACGCTGCGTCCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAGGAATTATTCTTTGGCAAGTACAGG
GACCCCAATGCTCAGGGACTCGTTGAACGCATTGTGGGTGGCCCGAATTATAAAGGGACTCGTAGAAGGCATTGAGGGCGGCCTGAATTTTAGTACCTATGTGCACATAG
AGGGTGAAGATTCTCACTCACTGGGAGACGACTCTAAAGGTGCTCAGAATCCTTCTCTCAAAAGAGCTCGAAATGGAGGCTGGTTATGCTGTTTGAGCATGCGTCTGTTT
CTTTCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCATTTGTTCTCGCAGCAGCTTCATCTCTTCGTACTTGGTTGTTTGCGCTTCTTTTCTTCTTAA
CCCTGCATTAGGAACAGAAAAGCTCATCGTTTTTCAGCATGACAGTTCCTGTTGCCGATCGAAGTTGAGGAGGTTAGTCCTAGAGTGGGGTGTGAGGATAGATGGGCGTG
GGTTCTGGGGGGTTCTGACTAGTTTTTTGTTAGGAGTTATTGGGAGGCTTTGCGTCCTAGGTGGGGGAAGGGAGGTTAGAGTGTCTTGGGATCATTTGCTTTGGTTTGGG
GGTAATATTCCTTGGCATTCTTTCTATGCTTGGTTAGCTGTGAGAGATAGGTTAGGTACTAGGGATTGGTTATATCGTTGGGGTGAGGAGAGGAATCATCATTTGCATGG
TGGCTCCCCTCGTGCTGCTTCTCTAATCTTGCATCTCATTCCTTTAGTTGTTCGTGCGCGTGCTGTTTCGTGGTTGTGGGGTTTTGTTTATGCTTTGTCTCGTGTTGTGG
GGTTGTTCGTTCGTCTGTTGGTTCTCAATTTGTTCTCCGATTTTGACCGATTGCGAATTTGTATTCGTCGATCCGAATTGAGACCCAACAAAGTTTCGAATCTCCATTCG
ATTCAGCGAAGAGGCGATTTCTGCTCTAGCTTGGAGACCCGCGGGAAGTTGACGTGA

mRNA sequence

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Protein sequence

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MEVDREGKEVKRIGKDISIGVEYYSKLSNALTISKECSRVLESGSVTCGKQVAKGEEKLDGKLPINRTLREKERLMTLKEEFWRERKERRVGFAVVINFVLKGRVAFNRA
DRGKWSLAFLRLERCVQEAREEEIEERKRNYSLASTGTPMLRDSLNALWVARIIKGLVEGIEGGLNFSTYVHIEGEDSHSLGDDSKGAQNPSLKRARNGGWLCCLSMRLF
LSRRMVSTHRLDAWVSICSRSSFISSYLVVCASFLLNPALGTEKLIVFQHDSSCCRSKLRRLVLEWGVRIDGRGFWGVLTSFLLGVIGRLCVLGGGREVRVSWDHLLWFG
GNIPWHSFYAWLAVRDRLGTRDWLYRWGEERNHHLHGGSPRAASLILHLIPLVVRARAVSWLWGFVYALSRVVGLFVRLLVLNLFSDFDRLRICIRRSELRPNKVSNLHS
IQRRGDFCSSLETRGKLT

Clc11G09010 (gene) of Watermelon (cordophanus) v2 genome