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Clc11G09030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G09030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlutamate-gated kainate-type ion channel receptor subunit GluR5
Genome locationClcChr11:11097257..11098075
RNA-Seq ExpressionClc11G09030
SyntenyClc11G09030
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC32449.1 hypothetical protein L484_012616 [Morus notabilis]3.3e-1060.29Show/hide
Query:  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRNLPAKDGNV
        LFLTL+  L  + S+A+R+P+  WEQMLPKKLPSP+S+PSKGTNS++  SSSK + V +NLP+ DG V
Subjt:  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRNLPAKDGNV

KAE8646070.1 hypothetical protein Csa_015561 [Cucumis sativus]6.2e-2583.12Show/hide
Query:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        MLLSFN RFILFLTL+L L S+S+DAARVP PYWEQMLPKKLPSPSSAPSKGTN++APSSSK M+V+ NLPAKDGNV
Subjt:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

KAF9855135.1 hypothetical protein H0E87_006638 [Populus deltoides]5.6e-1053.25Show/hide
Query:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        ML+S+  + +LF   LL    +SSDA+R+P+ YWEQMLPKKLP+PSS+PSKGTNS++ S S  ++   NL + DG V
Subjt:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

KAG6607702.1 hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia]9.2e-2161.11Show/hide
Query:  MSPSIPSQKPPPPFQTSSSNILNSNPKFTTSHHITMLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAME
        MSPSIPSQ PPP F + ++NI              M LSF  RFI  L L+L LAS+SS+AARVP  YWEQMLPKKLP+PSSAPSKGTNS+A SS K ++
Subjt:  MSPSIPSQKPPPPFQTSSSNILNSNPKFTTSHHITMLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAME

Query:  VSRNLPAK
        V  NLPAK
Subjt:  VSRNLPAK

TYK23265.1 glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa]4.7e-2583.12Show/hide
Query:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        MLL+FN RFILFLTL+L L S+SSDAARVP PYWEQMLPKKLPSPSSAPSKGTN++APSSSK M+V+ NLPAKDGNV
Subjt:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

TrEMBL top hitse value%identityAlignment
A0A5D3DI56 Glutamate-gated kainate-type ion channel receptor subunit GluR52.3e-2583.12Show/hide
Query:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        MLL+FN RFILFLTL+L L S+SSDAARVP PYWEQMLPKKLPSPSSAPSKGTN++APSSSK M+V+ NLPAKDGNV
Subjt:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

A0A6J5Y4V2 Uncharacterized protein3.6e-1060Show/hide
Query:  LLLTLAS--VSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        LL TL +  V S+A+R+P+  W+QMLPKKLP+PSS+PSKGTNS   SSSK++E  R LP+ DG V
Subjt:  LLLTLAS--VSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

A0A7N2MJW9 Uncharacterized protein8.5e-1259.74Show/hide
Query:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        ML S+  + +LF TLL  +  V S+A+R+P+ YWEQMLPKKLP PSS+PSKGTNS++ SSSKA++ +RNLP+ DG V
Subjt:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

A0A803PR73 Uncharacterized protein2.1e-1053.25Show/hide
Query:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
        ML S+  ++ LF  LL+    + S+A+R+P+ Y++QM+PKKLPSPSS+PSKGTNS+  SSSKA++   NLP+ DG V
Subjt:  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV

W9S9P5 Uncharacterized protein1.6e-1060.29Show/hide
Query:  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRNLPAKDGNV
        LFLTL+  L  + S+A+R+P+  WEQMLPKKLPSP+S+PSKGTNS++  SSSK + V +NLP+ DG V
Subjt:  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRNLPAKDGNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTT
ACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGC
CAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGC
AACGTTTAA
mRNA sequenceShow/hide mRNA sequence
AACAAAGGGCTCCAATTGCATAATATTATATCAAAGCTTCAAAACTTGGCTGAAACTTAGATTATTTTTTTTGTGGTATTAGGTAATGAAAGCCATAACATGAGGTACAT
GATCGGCAAGAATAATCAGCTTCCCTTTTGTCTGCCATTGTCGCACCTTTTCAACAACAAAACTAGTTGGCATTTTCCTTACATTACTCACCATGTCTCCTTCCATACCC
TCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAG
ATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGC
CGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAAGGTTCCAGG
TGATACAAGGAAGTTGGGTGCAAAAAATTATCCAATGTGACCTTCGTAATCCGGTCGCTTCCTTCTCATAATCATTGGATATAGAATCCAAATGTAGTTTTTAATTTCTC
TCTTCCGCCGGCCGGTTGCAGCCTCACCAATAATTTTTCGCCCCAAACGAAGGGAAAATTGAGGGACTGAAGGACGAGGGGCAACGTGGCGGTTTATGCGATGGCGTCCT
ACTGGTTCGGTGGCTTGAGCTCTGATGGGCTTTCATGGCGGATTGGTTA
Protein sequenceShow/hide protein sequence
MSPSIPSQKPPPPFQTSSSNILNSNPKFTTSHHITMLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDG
NV