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Clc11G09065 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G09065
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr11:11285625..11286033
RNA-Seq ExpressionClc11G09065
SyntenyClc11G09065
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057610.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2355.56Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AKGL +K FPYYD+LT VFG+DRAT   A T A+VGS EP        M
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM

Query:  EEKNEDIL
         + NED L
Subjt:  EEKNEDIL

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-2461.36Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AKGL +KSFPYYD+LT VFG+DRAT   A T A+VGS
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]8.6e-2450.88Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----
        +Q S  ++  V++LK+ Y+ IAEM G  CSGFGWN E + I  E  +FD W+KSHP+AKGL HKSFPYYDDL+ VFGKDRAT + + T   VGS      
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----

Query:  ----PVMEEKNEDI
            P+ +  +EDI
Subjt:  ----PVMEEKNEDI

XP_017251089.1 PREDICTED: uncharacterized protein At2g29880-like [Daucus carota subsp. sativus]1.1e-2354.9Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE
        M+  PH+ESRVR  ++QY  I EM G  CSGFGWN   K I CE  IF+ W+KSHP+AKGL +KSFPYYD+L+ VFGKDRA      + A+   E   EE
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE

Query:  KN
        +N
Subjt:  KN

XP_038987004.1 uncharacterized protein At2g29880-like [Phoenix dactylifera]8.6e-2452.48Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE
        ++ +PH+ESRV+ LK+QYN IAEMLG  CSGFGW+   K + CE   F  WVKSHP+A+G+ +K FP+++DLT +FG+DRAT   A   A+   E  MEE
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE

Query:  K
        +
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A161XV48 Myb_DNA-bind_3 domain-containing protein5.4e-2454.9Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE
        M+  PH+ESRVR  ++QY  I EM G  CSGFGWN   K I CE  IF+ W+KSHP+AKGL +KSFPYYD+L+ VFGKDRA      + A+   E   EE
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEE

Query:  KN
        +N
Subjt:  KN

A0A1S3B4L3 uncharacterized protein LOC1034859534.2e-2450.88Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----
        +Q S  ++  V++LK+ Y+ IAEM G  CSGFGWN E + I  E  +FD W+KSHP+AKGL HKSFPYYDDL+ VFGKDRAT + + T   VGS      
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----

Query:  ----PVMEEKNEDI
            P+ +  +EDI
Subjt:  ----PVMEEKNEDI

A0A5A7U0H7 Retrotransposon protein4.2e-2450.88Show/hide
Query:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----
        +Q S  ++  V++LK+ Y+ IAEM G  CSGFGWN E + I  E  +FD W+KSHP+AKGL HKSFPYYDDL+ VFGKDRAT + + T   VGS      
Subjt:  MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSE-----

Query:  ----PVMEEKNEDI
            P+ +  +EDI
Subjt:  ----PVMEEKNEDI

A0A5A7UR77 Retrotransposon protein5.4e-2455.56Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AKGL +K FPYYD+LT VFG+DRAT   A T A+VGS EP        M
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS-EP-------VM

Query:  EEKNEDIL
         + NED L
Subjt:  EEKNEDIL

A0A5A7V6Q9 Retrotransposon protein1.9e-2461.36Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS
        ++ R++TLKR +  IAEM G  CSGFGWN E K I  E ++FD WV+SHP+AKGL +KSFPYYD+LT VFG+DRAT   A T A+VGS
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein3.5e-0734.62Show/hide
Query:  SRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHA
        SR++ LK  Y    + L    SGFGW+ E K      +++  ++K+HP+ K +  +S  +++DL I+FG   AT S A
Subjt:  SRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHA

AT2G24960.1 unknown protein8.6e-0628.85Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE
        L  R   L + Y  +  +L     GF W+  R  I  +  ++D ++K HP A+    KS P Y+DL  +F      G D      A  T+E  +    +E
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE

Query:  KNED
        +N D
Subjt:  KNED

AT2G24960.2 unknown protein8.6e-0628.85Show/hide
Query:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE
        L  R   L + Y  +  +L     GF W+  R  I  +  ++D ++K HP A+    KS P Y+DL  +F      G D      A  T+E  +    +E
Subjt:  LESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVF------GKDRATRSHATTTAEVGSEPVMEE

Query:  KNED
        +N D
Subjt:  KNED

AT5G27260.1 unknown protein1.1e-0834.57Show/hide
Query:  HLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHA
        H  SR++ LK QY    + L    SGFGW+   K      +++  ++K+HP+ K L + +F ++D+L I+FG+  AT  +A
Subjt:  HLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAACGTGATTGCTGAAATGTTGGGCTCAGGCTGTAGTGGGTTTGGTTGGAATGCAGA
GCGCAAATATATTGACTGTGAGGCGAAGATATTTGACATATGGGTCAAGAGTCATCCGAGTGCGAAAGGATTGTGCCATAAGTCATTTCCGTACTATGACGACTTGACCA
TAGTATTCGGCAAAGACAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGAAGAACGAGGACATCCTGAATAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAACGTGATTGCTGAAATGTTGGGCTCAGGCTGTAGTGGGTTTGGTTGGAATGCAGA
GCGCAAATATATTGACTGTGAGGCGAAGATATTTGACATATGGGTCAAGAGTCATCCGAGTGCGAAAGGATTGTGCCATAAGTCATTTCCGTACTATGACGACTTGACCA
TAGTATTCGGCAAAGACAGAGCCACAAGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGAAGAACGAGGACATCCTGAATAACTAG
Protein sequenceShow/hide protein sequence
MQVSPHLESRVRTLKRQYNVIAEMLGSGCSGFGWNAERKYIDCEAKIFDIWVKSHPSAKGLCHKSFPYYDDLTIVFGKDRATRSHATTTAEVGSEPVMEEKNEDILNN