CuGenDBv2

Gene ID	Clc11G09140
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Genome location	ClcChr11:11381178..11382008
RNA-Seq Expression	Clc11G09140
Synteny	Clc11G09140
Gene Ontology terms	GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596619.1 E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-13

42.25

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+ ++NR  +                      +T S + + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+LKS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

XP_004136517.1 E3 ubiquitin-protein ligase PUB23 [Cucumis sativus]

9.9e-30

62.77

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSS +SSIRRLRSISA+ +TNR                V +DSSAS+ ALS+LHNLRL DSTFK LAT PEFL SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV +PIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

XP_008442921.1 PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Cucumis melo]

1.1e-31

64.96

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSSL+SSIRRLRSISA+ +TNR                VD+DSSAS+ ALS+LHNLRL DSTFK LATHPE L SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV DPIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

XP_023540239.1 E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo]

3.8e-13

42.25

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+ ++NR  +                      +T S + + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+LKS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

XP_038903290.1 E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida]

4.3e-33

67.91

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL+LIS+ANTSPSSL+SSI RLRSIS + +TNR                VDTDSSASY ALS+LHNLRL DSTFKRLATH EFL SLTN
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        FMKL+GT+ESSRAY VLILKSI EV DPIQL FL
Subjt:  FMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LB33 RING-type E3 ubiquitin transferase

4.8e-30

62.77

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSS +SSIRRLRSISA+ +TNR                V +DSSAS+ ALS+LHNLRL DSTFK LAT PEFL SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV +PIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

A0A1S3B6U7 RING-type E3 ubiquitin transferase

5.1e-32

64.96

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSSL+SSIRRLRSISA+ +TNR                VD+DSSAS+ ALS+LHNLRL DSTFK LATHPE L SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV DPIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

A0A5D3DNW0 RING-type E3 ubiquitin transferase

5.1e-32

64.96

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN
        P   PP   + IL++IST+NTSPSSL+SSIRRLRSISA+ +TNR                VD+DSSAS+ ALS+LHNLRL DSTFK LATHPE L SLT+
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNR--------------CFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTN

Query:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
        FMKL QGT ESSR Y VLILKSI EV DPIQL FL P
Subjt:  FMKL-QGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

A0A6J1GKE4 RING-type E3 ubiquitin transferase

5.3e-13

41.55

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+ ++NR  +                      +T S + + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV----------------------DTDSSASYGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+ KS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

A0A6J1KXX6 RING-type E3 ubiquitin transferase

5.3e-13

42.25

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Query:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV------------------DTDSSAS----YGALSSLHNLRLPDSTFKRLATHP
        P   PP   P ++ LIS+++++PSSL+S IRRLRS++A+ ++NR  +                  D D+  +    + ALS+LHNLRL DS  K L  + 
Subjt:  PLSNPPSMNPILY-LISTANTSPSSLVSSIRRLRSISADPKTNRCFV------------------DTDSSAS----YGALSSLHNLRLPDSTFKRLATHP

Query:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL
        E   SLT  M+ QGT E SRAY  L+LKS+ EV DP++L FL
Subjt:  EFLYSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35930.1 plant U-box 23

5.8e-04

32.62

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Query:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTN-RC------------FVDTDS---SASYGALSSLHNLRLPDSTFKRLATHPE---FL
        P   PP   + I  LI  + +S  + V  ++RLR I ++  TN RC             V  DS   S +  AL+ L++L   ++  K L  + +    +
Subjt:  PLSNPP-SMNPILYLISTANTSPSSLVSSIRRLRSISADPKTN-RC------------FVDTDS---SASYGALSSLHNLRLPDSTFKRLATHPE---FL

Query:  YSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFLNP
         SLT  M+ +G  E SR Y  L+LK+I EV DP+Q   L P
Subjt:  YSLTNFMKLQGTRESSRAYVVLILKSIFEVTDPIQLRFLNP

Sequences

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CDS sequence

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ATGGCTTCCCCACTCTCAAACCCCCCATCCATGAATCCAATCCTCTACCTCATTTCTACTGCCAACACTTCCCCTTCTTCCTTAGTCTCCTCCATCAGACGTCTCCGCTC
TATCTCCGCCGACCCTAAAACCAACCGCTGTTTTGTCGACACCGACTCCTCTGCTTCCTATGGAGCTCTCTCCTCTCTCCATAACCTCCGTCTCCCCGATTCAACATTCA
AACGCTTGGCTACCCACCCTGAGTTTCTCTATTCATTGACGAATTTCATGAAGTTACAGGGTACTCGTGAATCGTCCAGAGCATACGTGGTGTTGATTTTGAAATCGATC
TTCGAAGTCACTGATCCAATTCAACTAAGATTCTTAAATCCGATTAATTTGTGCAAATTGTTGAGATTTTGA

mRNA sequence

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TCTCTCTCAACTTACACTCTTCTCTTTTCTTCACCAGTTTACCCGCTCCCAACCACGCCCCAGTCTCTTTACCATTTTAAATCAAAGCTCCTCCCATGGCTTCCCCACTC
TCAAACCCCCCATCCATGAATCCAATCCTCTACCTCATTTCTACTGCCAACACTTCCCCTTCTTCCTTAGTCTCCTCCATCAGACGTCTCCGCTCTATCTCCGCCGACCC
TAAAACCAACCGCTGTTTTGTCGACACCGACTCCTCTGCTTCCTATGGAGCTCTCTCCTCTCTCCATAACCTCCGTCTCCCCGATTCAACATTCAAACGCTTGGCTACCC
ACCCTGAGTTTCTCTATTCATTGACGAATTTCATGAAGTTACAGGGTACTCGTGAATCGTCCAGAGCATACGTGGTGTTGATTTTGAAATCGATCTTCGAAGTCACTGAT
CCAATTCAACTAAGATTCTTAAATCCGATTAATTTGTGCAAATTGTTGAGATTTTGAAGGATCGCTCATCGTCTCAGCAGATTCTCAAGGCGGCTTTGGAGATTTTGATT
GTGGCGTGTCCATGGAGGAAGAACAGAGGGAAGGCGGTGGAGGCAGGTGGTGTTGGGGTTTTGGTTGAGACTAAGGTGGGGGGAGAGATAGAGAAAAAAGAAAAATGACC
CATCAACCTAAATTCGTATAAAATTGATAAATTTTGCTAATCACTTTTAGTTGTCCACTTAAATCATGCTATCTAACATCATTTTGAAACCTGACCAAATAGATACTTAA
TTCAAATTTCAAGACAAAAACGTATTTTGCCTTAATTCTTTTTTTTTATTTTAAATTTCCA

Protein sequence

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MASPLSNPPSMNPILYLISTANTSPSSLVSSIRRLRSISADPKTNRCFVDTDSSASYGALSSLHNLRLPDSTFKRLATHPEFLYSLTNFMKLQGTRESSRAYVVLILKSI
FEVTDPIQLRFLNPINLCKLLRF

Clc11G09140 (gene) of Watermelon (cordophanus) v2 genome