| GenBank top hits | e value | %identity | Alignment |
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| GAU42103.1 hypothetical protein TSUD_134870 [Trifolium subterraneum] | 3.2e-10 | 41.03 | Show/hide |
Query: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQGHVSMK
R+ +K DW FDSG SR+M G+ +L D+KS S T GA V L I KS P++ L GLTANLIS++QLCDQGH++++
Subjt: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQGHVSMK
Query: TIQKTVAKDGISGLPLL
+++K ++++ I GLP L
Subjt: TIQKTVAKDGISGLPLL
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| KAA0035514.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 8.0e-06 | 32.17 | Show/hide |
Query: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLY-SGLTANLISVNQLCDQ---------
W FDSG SR+M G +S+ ++L+ +CTS G VT D I K N +PC L+ Y GL ANLIS++QLCDQ
Subjt: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLY-SGLTANLISVNQLCDQ---------
Query: ----------------GHVSMKTIQKTVAKDGISGLPLLPAKG
GH+S++++ K + I G+P L G
Subjt: ----------------GHVSMKTIQKTVAKDGISGLPLLPAKG
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| KAA0056418.1 gag-pol polyprotein [Cucumis melo var. makuwa] | 8.0e-06 | 25.64 | Show/hide |
Query: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ----------
W FDSGSSR+M G +S+ ++L+ +C S G VT D I K N +PC + + GL ANLISV+QLCDQ
Subjt: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ----------
Query: -----------------------------------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELR
GH+S++++ K + + + G+P L G+ C DCQ T+ L+
Subjt: -----------------------------------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELR
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| MCH89489.1 gag-pol polyprotein [Trifolium medium] | 7.3e-07 | 27.33 | Show/hide |
Query: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ------
R+ ++ DW FDSG SR+M G + +L D+KS S VT D IK ++ L GLTANLIS++QLCDQ
Subjt: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ------
Query: ----------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELRNM
GH++++ +++ + ++ GLP L + +C +CQ TR+ +L+++
Subjt: ----------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELRNM
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| PNX99239.1 gag-pol polyprotein, partial [Trifolium pratense] | 4.3e-07 | 46.32 | Show/hide |
Query: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQG
R +K DW FDSG S++MIGEK+YL ++KS S N T GA + L S P +P S + L L GLTANLIS++QLCDQG
Subjt: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3N8B2 Gag-pol polyprotein (Fragment) | 2.1e-07 | 46.32 | Show/hide |
Query: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQG
R +K DW FDSG S++MIGEK+YL ++KS S N T GA + L S P +P S + L L GLTANLIS++QLCDQG
Subjt: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQG
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| A0A2Z6NJJ4 Reverse transcriptase Ty1/copia-type domain-containing protein | 1.5e-10 | 41.03 | Show/hide |
Query: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQGHVSMK
R+ +K DW FDSG SR+M G+ +L D+KS S T GA V L I KS P++ L GLTANLIS++QLCDQGH++++
Subjt: RSLAKGDWVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSNPQMPCCSASSTLWNFLYSGLTANLISVNQLCDQGHVSMK
Query: TIQKTVAKDGISGLPLL
+++K ++++ I GLP L
Subjt: TIQKTVAKDGISGLPLL
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| A0A5A7SMR2 Gag-pol polyprotein | 1.9e-05 | 24.1 | Show/hide |
Query: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ----------
W FDSG SR+M G +S+ ++L+ +CTS VT +D I K N +PC + + GL ANLIS++Q+CDQ
Subjt: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ----------
Query: -----------------------------------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELR
GH+SM+++ K + + + +P L G+ C DCQ T++ L+
Subjt: -----------------------------------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELR
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| A0A5D3DZQ7 Gag-pol polyprotein | 3.9e-06 | 25.64 | Show/hide |
Query: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ----------
W FDSGSSR+M G +S+ ++L+ +C S G VT D I K N +PC + + GL ANLISV+QLCDQ
Subjt: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLYSGLTANLISVNQLCDQ----------
Query: -----------------------------------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELR
GH+S++++ K + + + G+P L G+ C DCQ T+ L+
Subjt: -----------------------------------------------GHVSMKTIQKTVAKDGISGLPLLPAKGRIVCSDCQSCSATRLLQHELR
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| A0A5D3E4L4 Gag-pol polyprotein | 3.9e-06 | 32.17 | Show/hide |
Query: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLY-SGLTANLISVNQLCDQ---------
W FDSG SR+M G +S+ ++L+ +CTS G VT D I K N +PC L+ Y GL ANLIS++QLCDQ
Subjt: WVFDSGSSRYMIGEKSYLSDLKSISDRDNRKCTSQVGAVTLQDNVAMLTIIKSN---PQMPCCSASSTLWNFLY-SGLTANLISVNQLCDQ---------
Query: ----------------GHVSMKTIQKTVAKDGISGLPLLPAKG
GH+S++++ K + I G+P L G
Subjt: ----------------GHVSMKTIQKTVAKDGISGLPLLPAKG
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