CuGenDBv2

Gene ID	Clc11G09320
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Mitochondrial transcription termination factor family protein isoform 2
Genome location	ClcChr11:11902351..11908687
RNA-Seq Expression	Clc11G09320
Synteny	Clc11G09320
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009536 - plastid (cellular component) GO:0016020 - membrane (cellular component) GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domains	IPR003690 - Transcription termination factor, mitochondrial/chloroplastic IPR038538 - MTERF superfamily, mitochondrial/chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037010.1 Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa]

2.6e-122

88.51

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS
        DKMLGKAFGHIHSPYWGEDRKK++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPKSYNGSQS
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS

Query:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSSGRNAVATTAASSTSTQTYLLSEHFTTSP
         VEYSQKIGA GLIAMG EASIARASLVVAVS+GR+AV  TAAS TST TYLLSEHF  SP
Subjt:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSSGRNAVATTAASSTSTQTYLLSEHFTTSP

XP_004138649.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus]

3.0e-91

88.6

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PRKWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+K++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

XP_008441218.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo]

3.8e-94

90.16

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKK++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

XP_011649898.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus]

3.0e-91

88.6

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PRKWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+K++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

XP_038885056.1 uncharacterized protein LOC120075592 [Benincasa hispida]

2.3e-94

92.23

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSLVSPISTIDSATR CCSTR IATAISDA  SNVSF+YHPAKHMIKDVRRQTP P KWEI STTQVESLTLSDEDRKTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAF HIHSPYWGEDRKKE+PNIE VN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQN8 Uncharacterized protein

1.5e-91

88.6

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCS+VSF+ H AKH IK VRRQ P PRKWEI S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDR+K++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

A0A1S3B2X0 uncharacterized protein LOC103485418

1.9e-94

90.16

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKK++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

A0A5A7T0X2 Mitochondrial transcription termination factor family protein isoform 2

1.2e-122

88.51

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSL SPISTIDSATR CCSTRC ATAISDAVCSNVSF+YHPAKH IK VRRQ P PRKWE+ S+TQVESL LSDED+KTWE CRQALSVFSFSVEEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS
        DKMLGKAFGHIHSPYWGEDRKK++PNIEIVN+ILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLLDKEWGIQGK LRNLLLRNPKSYNGSQS
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQS

Query:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSSGRNAVATTAASSTSTQTYLLSEHFTTSP
         VEYSQKIGA GLIAMG EASIARASLVVAVS+GR+AV  TAAS TST TYLLSEHF  SP
Subjt:  KVEYSQKIGAFGLIAMGLEASIARASLVVAVSSGRNAVATTAASSTSTQTYLLSEHFTTSP

A0A6J1FK31 uncharacterized protein LOC111444935

5.2e-89

86.01

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSLVSPIST+DS TRLC ST CI TA S+AVCSNVSF+Y PAK+MI DVRRQ+P PRKWEI ST QVESL LSDED+KTWE CRQALS+FSFS EEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKKE+PNI+ VNEILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLL+KEWGIQGK LR+LLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

A0A6J1JTP6 uncharacterized protein LOC111489650

5.2e-89

86.01

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ
        MLGKSLVSPIST+DS TRLC ST CI TA S AVCSNVSF+Y PAK+MI DVRRQ+P PRKWEI ST+QVESL LSD+D+KTWE CRQALS+FSFS EEQ
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQ

Query:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        DKMLGKAFGHIHSPYWGEDRKKE+PNI+ VNEILEYLRTLGLSNDDLSKLLKKFPE LGCNLEQELKTNVQLL+KEWGIQGK LRNLLLRNPK
Subjt:  DKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G09620.1 Mitochondrial transcription termination factor family protein

5.8e-48

52.06

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Query:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEI-RSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEE
        M+G SL SP++T+ SA     S   + T  ++ +   ++ +YH        VR  + +  KW +  STTQVE+   S+ED   WE C++ALS F FSVEE
Subjt:  MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEI-RSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEE

Query:  QDKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK
        +DK+LGKAFGHIHSPYW E+R KE P +E +N+ILE+LR+LGLS++DL K++KKFPE LGC+LE+E+K N+ +L+ +WGI GK LRNLLLRNPK
Subjt:  QDKMLGKAFGHIHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTAGGAAAATCATTGGTGTCTCCCATATCAACCATTGATTCTGCTACTCGTCTCTGTTGTTCTACTCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAA
TGTAAGTTTCACCTATCATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGA
CATTAAGTGACGAGGATAGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCAC
ATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAATTCCTAATATTGAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCT
TTCTAAGCTGCTCAAAAAATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCAC
TAAGGAATCTTCTTCTGCGTAATCCCAAGAGCTATAATGGGTCTCAATCTAAGGTTGAATATTCCCAAAAGATAGGGGCATTTGGGCTTATTGCCATGGGTCTTGAGGCG
AGCATAGCAAGGGCAAGCTTGGTGGTTGCCGTAAGTTCCGGGCGGAACGCAGTGGCAACGACTGCAGCAAGTTCCACAAGCACGCAAACATATCTTCTTTCTGAACACTT
TACTACATCTCCTTGA

mRNA sequence

Show/hide mRNA sequence

GGTGAAGGCAAACCCAAAGATGGGTTATGTGGCTTTAGGCTGCAAGCAAAGGACAAGAAGATTGCTGTCTCATTTCTCAGCGTGAGCCAATCTGTGGTTGCGCATCTTCC
TAATTCTCGCATTGGCTGACCCTTCTTCTTCAACCTCCCCTGCACAACCACAACTCTATACGCTTTTCATCTTCAATCCCTCAAATCTCAGGGATGCTAGGAAAATCATT
GGTGTCTCCCATATCAACCATTGATTCTGCTACTCGTCTCTGTTGTTCTACTCGCTGCATTGCCACAGCCATATCAGATGCTGTATGTTCAAATGTAAGTTTCACCTATC
ATCCTGCTAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCAATCCCAGGAAGTGGGAAATCCGTTCAACTACTCAAGTTGAAAGCTTGACATTAAGTGACGAGGAT
AGGAAGACATGGGAAACTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAACAAGATAAGATGCTTGGAAAGGCATTCGGCCACATTCATTCACCCTACTG
GGGTGAAGACAGAAAGAAGGAAATTCCTAATATTGAAATTGTAAATGAAATACTGGAATATCTGAGGACACTTGGCCTTTCTAATGACGATCTTTCTAAGCTGCTCAAAA
AATTCCCAGAAGCTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTATTGGACAAAGAGTGGGGAATTCAAGGCAAACCACTAAGGAATCTTCTTCTG
CGTAATCCCAAGAGCTATAATGGGTCTCAATCTAAGGTTGAATATTCCCAAAAGATAGGGGCATTTGGGCTTATTGCCATGGGTCTTGAGGCGAGCATAGCAAGGGCAAG
CTTGGTGGTTGCCGTAAGTTCCGGGCGGAACGCAGTGGCAACGACTGCAGCAAGTTCCACAAGCACGCAAACATATCTTCTTTCTGAACACTTTACTACATCTCCTTGA

Protein sequence

Show/hide protein sequence

MLGKSLVSPISTIDSATRLCCSTRCIATAISDAVCSNVSFTYHPAKHMIKDVRRQTPNPRKWEIRSTTQVESLTLSDEDRKTWETCRQALSVFSFSVEEQDKMLGKAFGH
IHSPYWGEDRKKEIPNIEIVNEILEYLRTLGLSNDDLSKLLKKFPEALGCNLEQELKTNVQLLDKEWGIQGKPLRNLLLRNPKSYNGSQSKVEYSQKIGAFGLIAMGLEA
SIARASLVVAVSSGRNAVATTAASSTSTQTYLLSEHFTTSP

Clc11G09320 (gene) of Watermelon (cordophanus) v2 genome