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Clc11G09350 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G09350
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Genome locationClcChr11:12016513..12020105
RNA-Seq ExpressionClc11G09350
SyntenyClc11G09350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022139699.1 uncharacterized protein LOC111010547 [Momordica charantia]1.1e-2154.44Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDLGALKYF+GLE+  TN G+ + + KY +D+L RFGM   KPC TP++++S  D+  S CS ED++ YR ++G+LHY+TFTR DI F+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

XP_022143489.1 uncharacterized protein LOC111013365 [Momordica charantia]1.2e-2053.33Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDL  LKYF+GLE+  TN G+S++Q KY +D+L RFG+   KPC TP++++S  D+  + CS ED++ YR ++G+LHY+TFTR DIAF+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

XP_022151604.1 uncharacterized protein LOC111019517 [Momordica charantia]2.8e-2056.67Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDLG L++F+GLE+  ++ GISV Q+KY KD+L RFGM   KPC+TPIA++S +  ++S+CS  D K YR +VGALHY+TF+R +IAF+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

XP_022152156.1 uncharacterized protein LOC111019945 [Momordica charantia]9.0e-1954.44Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDLG L YF+GLE+  T+ GI V Q KY +DIL RFGM   KPC+TP+A+ + +D+    CS ED + YR ++GA +Y+TF+R DIAFS
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

XP_022157475.1 uncharacterized protein LOC111024167 [Momordica charantia]3.1e-1954.44Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTD+ +LKYF+GLE+  T  G+ V Q+KY KD+LHRFGM+  K C+TP+A+ S  D S  +CS +D + YR + GALHY+TF+R DIAF+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

TrEMBL top hitse value%identityAlignment
A0A6J1CDR7 uncharacterized protein LOC1110105475.5e-2254.44Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDLGALKYF+GLE+  TN G+ + + KY +D+L RFGM   KPC TP++++S  D+  S CS ED++ YR ++G+LHY+TFTR DI F+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

A0A6J1CPG5 uncharacterized protein LOC1110133656.0e-2153.33Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDL  LKYF+GLE+  TN G+S++Q KY +D+L RFG+   KPC TP++++S  D+  + CS ED++ YR ++G+LHY+TFTR DIAF+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

A0A6J1DDJ2 uncharacterized protein LOC1110195171.3e-2056.67Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDLG L++F+GLE+  ++ GISV Q+KY KD+L RFGM   KPC+TPIA++S +  ++S+CS  D K YR +VGALHY+TF+R +IAF+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

A0A6J1DGS4 uncharacterized protein LOC1110199454.3e-1954.44Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTDLG L YF+GLE+  T+ GI V Q KY +DIL RFGM   KPC+TP+A+ + +D+    CS ED + YR ++GA +Y+TF+R DIAFS
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

A0A6J1DT77 uncharacterized protein LOC1110241671.5e-1954.44Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS
        MTD+ +LKYF+GLE+  T  G+ V Q+KY KD+LHRFGM+  K C+TP+A+ S  D S  +CS +D + YR + GALHY+TF+R DIAF+
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFS

SwissProt top hitse value%identityAlignment
P92519 Uncharacterized mitochondrial protein AtMg008104.5e-1340.22Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD
        M DLG + YF+G+++    +G+ ++QTKYA+ IL+  GM D KP +TP+ +   + VS +     D   +R IVGAL Y+T TR DI+++ +
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-0734.88Show/hide
Query:  LKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD
        L YF+G+E  +   G+ ++Q +Y  D+L R  M   KP  TP+A +    + +      D   YR IVG+L Y+ FTR DI+++ +
Subjt:  LKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.7e-0834.88Show/hide
Query:  LKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD
        L YF+G+E  +   G+ ++Q +Y  D+L R  M   KP  TP+A +    + +    P D   YR IVG+L Y+ FTR D++++ +
Subjt:  LKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.2e-1341.3Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD
        + DLG LKYF+GLE+ ++ AGI++ Q KYA D+L   G+   KP + P+   S    ++S     D KAYR ++G L Y+  TR DI+F+ +
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD

ATMG00810.1 DNA/RNA polymerases superfamily protein3.2e-1440.22Show/hide
Query:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD
        M DLG + YF+G+++    +G+ ++QTKYA+ IL+  GM D KP +TP+ +   + VS +     D   +R IVGAL Y+T TR DI+++ +
Subjt:  MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATCTAGGAGCTCTTAAATATTTTATGGGGCTTGAAGTTATCAAGACTAATGCTGGTATTTCTGTGACTCAAACTAAGTATGCTAAAGACATCTTACATCGTTT
TGGTATGAGCGACTACAAACCATGTAATACTCCTATTGCAATCAACTCTTTCAATGATGTTTCTAACTCGGTTTGTTCTCCTGAGGATGTTAAGGCCTATAGAGAAATTG
TTGGAGCACTCCATTATATTACTTTCACAAGAGCGGATATTGCATTTTCTGCGGACGGACGCCGGGATGCTGGAACCGCCTTACTCGTAAACTCAGAGACTCTTCAGAAC
TTCCGAGAAGAAGATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATCTAGGAGCTCTTAAATATTTTATGGGGCTTGAAGTTATCAAGACTAATGCTGGTATTTCTGTGACTCAAACTAAGTATGCTAAAGACATCTTACATCGTTT
TGGTATGAGCGACTACAAACCATGTAATACTCCTATTGCAATCAACTCTTTCAATGATGTTTCTAACTCGGTTTGTTCTCCTGAGGATGTTAAGGCCTATAGAGAAATTG
TTGGAGCACTCCATTATATTACTTTCACAAGAGCGGATATTGCATTTTCTGCGGACGGACGCCGGGATGCTGGAACCGCCTTACTCGTAAACTCAGAGACTCTTCAGAAC
TTCCGAGAAGAAGATCCCTAA
Protein sequenceShow/hide protein sequence
MTDLGALKYFMGLEVIKTNAGISVTQTKYAKDILHRFGMSDYKPCNTPIAINSFNDVSNSVCSPEDVKAYREIVGALHYITFTRADIAFSADGRRDAGTALLVNSETLQN
FREEDP