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Clc11G09390 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G09390
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationClcChr11:12039902..12040288
RNA-Seq ExpressionClc11G09390
SyntenyClc11G09390
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN64407.1 hypothetical protein VITISV_003511 [Vitis vinifera]5.4e-3359.84Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIADG+F+ IAGKG I +S  + L+SVLHVP+L CNLLSVSK+S+D+NC VIF E+H +FQDQ SG+ I  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL + + IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

CAN67064.1 hypothetical protein VITISV_017541 [Vitis vinifera]5.4e-3360.63Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIADG+F+ IAGKG I +S  + L+SVLHVP+L CNLLSVSK+S+D+NC VIF E+H +FQDQ SG+TI  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL V++ I+
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

CAN76494.1 hypothetical protein VITISV_024984 [Vitis vinifera]5.4e-3359.84Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIA G+F+ IA KG I +S  + L+SVLHVP+L CNLLSVSK+S+D+NC VIF E+HC+FQDQ SG+TI  A+MI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL V++ IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

CAN76591.1 hypothetical protein VITISV_020293 [Vitis vinifera]2.1e-3260.63Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MTS S +F+SYSP    +KVRIADG+F+ I GKG I +S  + L+SVLHVP+L CNLL VSK+SKD+NC VIF E+HC+FQD  SG+TI  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F +   S+K  QGLSS+S L V + IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

CAN82268.1 hypothetical protein VITISV_009286 [Vitis vinifera]1.4e-3360.63Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIA+ +F+ IA KG I +S  + L+SVLHVP+L CNLLSVSK+SKD+NC VIF E+HC+FQDQ SG+TI  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL V++ IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

TrEMBL top hitse value%identityAlignment
A5AK63 Uncharacterized protein6.9e-3460.63Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIA+ +F+ IA KG I +S  + L+SVLHVP+L CNLLSVSK+SKD+NC VIF E+HC+FQDQ SG+TI  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL V++ IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

A5ARX9 ABC transporter domain-containing protein2.6e-3360.63Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIADG+F+ IAGKG I +S  + L+SVLHVP+L CNLLSVSK+S+D+NC VIF E+H +FQDQ SG+TI  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL V++ I+
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

A5B683 Uncharacterized protein2.6e-3359.84Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIA G+F+ IA KG I +S  + L+SVLHVP+L CNLLSVSK+S+D+NC VIF E+HC+FQDQ SG+TI  A+MI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL V++ IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

A5B9C7 Uncharacterized protein9.9e-3360.63Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MTS S +F+SYSP    +KVRIADG+F+ I GKG I +S  + L+SVLHVP+L CNLL VSK+SKD+NC VIF E+HC+FQD  SG+TI  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F +   S+K  QGLSS+S L V + IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

A5CB87 Reverse transcriptase Ty1/copia-type domain-containing protein2.6e-3359.84Show/hide
Query:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY
        MT+ S +F+SYSP    +KVRIADG+F+ IAGKG I +S  + L+SVLHVP+L CNLLSVSK+S+D+NC VIF E+H +FQDQ SG+ I  ARMI+GLYY
Subjt:  MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYY

Query:  FDEVSTSHKKIQGLSSVSSLPVQETIM
        F++   S+K  QGLSS+SSL + + IM
Subjt:  FDEVSTSHKKIQGLSSVSSLPVQETIM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGTTTCTCGTGTTTATTTGATTCATACTCCCCTGTTTATAGTAAAGAAAAAGTCCGTATTGCCGATGGTAGTTTTACATCTATTGCAGGCAAAGGAACAATTTC
CCTAAGTACAAAACTCATACTACGTTCTGTTCTTCATGTTCCTCAATTAGCTTGTAATTTACTATCTGTGAGCAAAATATCTAAGGATGCTAACTGTCGTGTTATCTTTT
GTGAAACCCATTGTCTCTTTCAGGATCAGGACTCGGGGGAGACGATTAGATGTGCTAGGATGATTGATGGTCTCTATTACTTTGATGAAGTTTCAACTAGTCATAAAAAG
ATTCAGGGCTTGAGTAGTGTCAGTTCTCTTCCTGTTCAAGAAACTATTATGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGTTTCTCGTGTTTATTTGATTCATACTCCCCTGTTTATAGTAAAGAAAAAGTCCGTATTGCCGATGGTAGTTTTACATCTATTGCAGGCAAAGGAACAATTTC
CCTAAGTACAAAACTCATACTACGTTCTGTTCTTCATGTTCCTCAATTAGCTTGTAATTTACTATCTGTGAGCAAAATATCTAAGGATGCTAACTGTCGTGTTATCTTTT
GTGAAACCCATTGTCTCTTTCAGGATCAGGACTCGGGGGAGACGATTAGATGTGCTAGGATGATTGATGGTCTCTATTACTTTGATGAAGTTTCAACTAGTCATAAAAAG
ATTCAGGGCTTGAGTAGTGTCAGTTCTCTTCCTGTTCAAGAAACTATTATGCTTTGA
Protein sequenceShow/hide protein sequence
MTSFSCLFDSYSPVYSKEKVRIADGSFTSIAGKGTISLSTKLILRSVLHVPQLACNLLSVSKISKDANCRVIFCETHCLFQDQDSGETIRCARMIDGLYYFDEVSTSHKK
IQGLSSVSSLPVQETIML