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Clc11G09605 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G09605
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationClcChr11:12350769..12351122
RNA-Seq ExpressionClc11G09605
SyntenyClc11G09605
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148136.1 uncharacterized protein LOC111016889 [Momordica charantia]2.5e-2151.38Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + +TC C EFDY  IPC+HA+AG  + NI+PY LC   YT  S ++  YAEPIFP+ H+S WK +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

XP_022152406.1 uncharacterized protein LOC111020142 [Momordica charantia]1.3e-2049.54Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + + C C +FDY +IPC+HA+AG  + NI+PYTLC  VYT  S ++  YAEPIFP+ H+S W  +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+ +T
Subjt:  PSAGEIRKT

XP_022153146.1 uncharacterized protein LOC111020715 [Momordica charantia]2.8e-2050.46Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + +TC C EFDY  IPC+HA+A   + NI+PYTLC   YT  S ++  YAEPIFP+ H+S W  +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

XP_022158663.1 uncharacterized protein LOC111025125 [Momordica charantia]1.6e-2050.46Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + +TC C EFDY  I C+HA+ G  + NI+PYTLC   YT  S ++  YAEPIFP+ H+S WK +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

XP_022159268.1 uncharacterized protein LOC111025678 [Momordica charantia]2.1e-2051.38Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+L+   C C EFDY  IPC+HA+A   + NI+PY+LC   YT  S +L  YAEPIFP+ HIS W  +P+FV+  V  PK V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

TrEMBL top hitse value%identityAlignment
A0A6J1D4G8 uncharacterized protein LOC1110168891.2e-2151.38Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + +TC C EFDY  IPC+HA+AG  + NI+PY LC   YT  S ++  YAEPIFP+ H+S WK +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

A0A6J1DHM2 uncharacterized protein LOC1110201426.1e-2149.54Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + + C C +FDY +IPC+HA+AG  + NI+PYTLC  VYT  S ++  YAEPIFP+ H+S W  +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+ +T
Subjt:  PSAGEIRKT

A0A6J1DJT1 uncharacterized protein LOC1110207151.4e-2050.46Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + +TC C EFDY  IPC+HA+A   + NI+PYTLC   YT  S ++  YAEPIFP+ H+S W  +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

A0A6J1DWR5 uncharacterized protein LOC1110251258.0e-2150.46Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+ + +TC C EFDY  I C+HA+ G  + NI+PYTLC   YT  S ++  YAEPIFP+ H+S WK +P FVD  V  P +V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

A0A6J1DYC4 uncharacterized protein LOC1110256781.0e-2051.38Show/hide
Query:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI
        DG+ +  V+L+   C C EFDY  IPC+HA+A   + NI+PY+LC   YT  S +L  YAEPIFP+ HIS W  +P+FV+  V  PK V  V RR  VRI
Subjt:  DGHCNPRVNLHVKTCMCGEFDY-DIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRI

Query:  PSAGEIRKT
        PS GE+R+T
Subjt:  PSAGEIRKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGTCACTGTAACCCCCGTGTAAATTTGCATGTGAAGACATGCATGTGTGGAGAATTTGATTACGATATCCCTTGTGCACATGCACTCGCCGGTTTTCGGGTAAG
TAATATTGATCCCTATACTCTATGCTTTAGTGTGTATACTGTTTTATCATTGTTATTAACAAGGTATGCAGAGCCTATATTCCCTCTATGTCATATATCAGAGTGGAAAA
AAACACCGAAGTTCGTAGACAGAGTTGTCCTACATCCTAAGGTTGTTGGAATAGTCAGCCGTCGACCCATTGTTCGAATTCCATCAGCAGGTGAAATACGAAAAACAGAT
TTGCAAATGTCATTGGTGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGTCACTGTAACCCCCGTGTAAATTTGCATGTGAAGACATGCATGTGTGGAGAATTTGATTACGATATCCCTTGTGCACATGCACTCGCCGGTTTTCGGGTAAG
TAATATTGATCCCTATACTCTATGCTTTAGTGTGTATACTGTTTTATCATTGTTATTAACAAGGTATGCAGAGCCTATATTCCCTCTATGTCATATATCAGAGTGGAAAA
AAACACCGAAGTTCGTAGACAGAGTTGTCCTACATCCTAAGGTTGTTGGAATAGTCAGCCGTCGACCCATTGTTCGAATTCCATCAGCAGGTGAAATACGAAAAACAGAT
TTGCAAATGTCATTGGTGTGGTAA
Protein sequenceShow/hide protein sequence
MDGHCNPRVNLHVKTCMCGEFDYDIPCAHALAGFRVSNIDPYTLCFSVYTVLSLLLTRYAEPIFPLCHISEWKKTPKFVDRVVLHPKVVGIVSRRPIVRIPSAGEIRKTD
LQMSLVW