CuGenDBv2

Gene ID	Clc11G10110
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	protein BTR1
Genome location	ClcChr11:14280930..14294459
RNA-Seq Expression	Clc11G10110
Synteny	Clc11G10110
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR036612 - K Homology domain, type 1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7031990.1 Protein BTR1, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-20

37.55

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Query:  KKGGGRRMESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESN
        ++GG RRMESTESSY+SS EAP K+SPPPPKSPNS        +  K  YIRF                                               
Subjt:  KKGGGRRMESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESN

Query:  ISETHFSAATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIV
                                                              ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+
Subjt:  ISETHFSAATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIV

Query:  M----------AIELVLAKLLSELHAEEGADVEPRTK
        M          A+ELVLAKLLSELHAEE  D EPRTK
Subjt:  M----------AIELVLAKLLSELHAEEGADVEPRTK

XP_004142445.1 protein BTR1 isoform X1 [Cucumis sativus]

1.6e-19

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  K  YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A+ELVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

XP_011655857.1 protein BTR1 isoform X2 [Cucumis sativus]

1.6e-19

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  K  YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A+ELVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

XP_022139256.1 protein BTR1 [Momordica charantia]

1.6e-19

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  K  YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A+ELVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

XP_022945468.1 protein BTR1 [Cucurbita moschata]

7.2e-20

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  KG YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A++LVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWP6 Uncharacterized protein

7.7e-20

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  K  YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A+ELVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

A0A1S3BFZ8 protein BTR1

7.7e-20

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  K  YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A+ELVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

A0A6J1CC53 protein BTR1

7.7e-20

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  K  YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A+ELVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

A0A6J1G0Z7 protein BTR1

3.5e-20

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  KG YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A++LVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

A0A6J1HU77 protein BTR1-like

3.5e-20

38.26

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Query:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS
        MESTESSY+SS EAPAK+SPPPPKSPNS        +  KG YIRF                                                      
Subjt:  MESTESSYISSLEAPAKQSPPPPKSPNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFS

Query:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------
                                                       ++   A G  I   GSTINDFQSQSGARIQLSRNHE FPGTTDRI+M      
Subjt:  AATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKSTHGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM------

Query:  ----AIELVLAKLLSELHAEEGADVEPRTK
            A++LVLAKLLSELHAEEG DVEPRTK
Subjt:  ----AIELVLAKLLSELHAEEGADVEPRTK

SwissProt top hits

e value

%identity

Alignment

Q9LZ82 Protein BTR1

2.7e-14

57.69

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Query:  ACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM----------AIELVLAKLLSELHAEEGADVEPRTK
        A G  I   GSTI +FQ++SGARIQLSRN E FPGTTDRI+M           +EL+L KL SELHAE+G +VEPR +
Subjt:  ACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM----------AIELVLAKLLSELHAEEGADVEPRTK

Arabidopsis top hits

e value

%identity

Alignment

AT5G04430.1 binding to TOMV RNA 1L (long form)

1.9e-15

57.69

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Query:  ACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM----------AIELVLAKLLSELHAEEGADVEPRTK
        A G  I   GSTI +FQ++SGARIQLSRN E FPGTTDRI+M           +EL+L KL SELHAE+G +VEPR +
Subjt:  ACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM----------AIELVLAKLLSELHAEEGADVEPRTK

AT5G04430.2 binding to TOMV RNA 1L (long form)

1.9e-15

57.69

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Query:  ACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM----------AIELVLAKLLSELHAEEGADVEPRTK
        A G  I   GSTI +FQ++SGARIQLSRN E FPGTTDRI+M           +EL+L KL SELHAE+G +VEPR +
Subjt:  ACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVM----------AIELVLAKLLSELHAEEGADVEPRTK

Sequences

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CDS sequence

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ATGGCAACCTGTTGTGGAGGAAATAATTTTGGTGTAAACGCAAAGGTAACGGAAGCTGATCATGCGTTGAAGTTGAGACGCGTTGAGGACATAAGACGTGGAGGATCATT
ATGCGTCAAACGCATTGAAGGCAATGTGCCGATTAGAAGTAAGGGCCACGAGGAGTTTGGGAGCTGGTCTGCGGTGAGGCTGTTGTGCGGCGAACACTACCATGCGTCGA
AGGCTGAGGCCGTGTGTGTTGCTGAAACTGAGCATAGGAGGAAGAAGAGACGGGAGTTGAACTGTCGAATGAGTGGAGGTAACTCGGAGTTGTCGAAGGATATGTCCCAA
ACGGGGAAGATGTGCTTCATGAAATTTTTAGGCTTGCGTCTCACAACTCTCGCTAGAGTATCGCTGGGTATCGCTCCTCAAGGCCAAGAAGAGCTCGGGGAGGCTTATAA
CCCACTTAGAGCCGGGACCGATTCGAGCGTGTCCGGGACGCCTAGCCTACTGAAGAATCTCGTCTGGACCTATCTGGAAGCGAACCTCTGGGATAGTTTCGCTGTCGCTG
CCACCATCTTCGTGAAGAAGGGAGGAGGAAGGAGAATGGAGTCCACTGAGTCTTCATACATCTCGTCCCTAGAGGCTCCTGCAAAGCAATCTCCTCCGCCGCCAAAATCT
CCAAACTCGGCACTTGAAAAGTGCTTTCTATTCTCTCAAATTAAGGGAGTTTATATTAGATTTCACTTGTTTGCTAGTGATTTTCAGACGCAGAGTAGCATTGCGGCGCC
AAGATGGCGCTGCCTCGACGCATCCTTGCTGAAACGCATTCTAGCGCTGCGACACTTAGACGACGCTGCCGCGACGCTAAAACCCGAGAGCAATATTTCTGAAACGCATT
TTAGCGCTGCGACGCGTGGACGGCGCTGTCGTGGCGCTAAAACCCGAGAGCAAGCTTTTTCGGATGCAGCCCTAGCGCCGCGACGCCAGCTTTCTTTAATTGAAAAATCT
ACTCATGGTTTTGTTGGAATGATTATGCTTTTCATTGTTATTGTGTTTAATGCTTGTGGATTGGCTATCTTCACATGTGGTTCAACAATTAATGATTTCCAGTCACAGTC
TGGTGCACGAATCCAATTGTCACGGAACCATGAAGTTTTTCCTGGAACCACTGATAGGATCGTTATGGCCATAGAACTCGTTCTTGCTAAGTTGTTGAGTGAGCTTCATG
CTGAAGAAGGAGCTGATGTTGAACCGAGAACAAAAGACCAACGCATAGAGGAAGAGCTTGAGAAGGATTTGTCGTCATTGACGCCTAGTGGCATTGTAGAGGGCGACGCA
TCCGAAAGAGAAGTAAGAAGAGTCGAGATGCACTTTGCGGAAATAATCAACCTTGCGTTGAAGGGCAGGGTTGCGTTCAACCGAGCTAACAGAGGAAAATGGAGTTTTGC
ATTTCTAAGATTAGAACGCTGCATCCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAAGAAGTATTCTTTGGCAAGTACAGGTAGCATGACAGTTCCCGTTGTTG
ATCGAAGTCGAGGTCTGCAACTTCCTTGCTTTGCCTTGATTTTTCTTGATGAATTGGACTGCTGGAAACCCCCAAATTTTATAGAGTTTGGTCGCCCAAAATTTCCAAAA
ATACAGATTTTTCAATTAAGGAAAGCTGTCGCTAGGGCTGCATCCGAAAAAGTTTGCTCTCGGGTTTTAGCACCGCGGCAGCGCCGTCCAAGCGTCGCAGCGCTAAAATG
CGTCTCAGAAATATTGCTCTCGGGTTTTAGCGTCGCGGTAGCGCCGTCTAAGCGTCACAGCGCTAGAATGCGTTTCAGCAAGGATGCGTCGAGGCAGCGCCATCTTGGCG
CCGCAATGCTACTCTGCGTCCAGAACCATGCGTTGATGTTTCAGCGCCGCGGCGCTATCCCCAAAATTTGCCCTTTTTGGTTTTTCAACTCTTTTTTGCCATATTCTTGC
TCGGTTTTGATCTTTTAA

mRNA sequence

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Protein sequence

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MATCCGGNNFGVNAKVTEADHALKLRRVEDIRRGGSLCVKRIEGNVPIRSKGHEEFGSWSAVRLLCGEHYHASKAEAVCVAETEHRRKKRRELNCRMSGGNSELSKDMSQ
TGKMCFMKFLGLRLTTLARVSLGIAPQGQEELGEAYNPLRAGTDSSVSGTPSLLKNLVWTYLEANLWDSFAVAATIFVKKGGGRRMESTESSYISSLEAPAKQSPPPPKS
PNSALEKCFLFSQIKGVYIRFHLFASDFQTQSSIAAPRWRCLDASLLKRILALRHLDDAAATLKPESNISETHFSAATRGRRCRGAKTREQAFSDAALAPRRQLSLIEKS
THGFVGMIMLFIVIVFNACGLAIFTCGSTINDFQSQSGARIQLSRNHEVFPGTTDRIVMAIELVLAKLLSELHAEEGADVEPRTKDQRIEEELEKDLSSLTPSGIVEGDA
SEREVRRVEMHFAEIINLALKGRVAFNRANRGKWSFAFLRLERCIQEAREEEIEERKKKYSLASTGSMTVPVVDRSRGLQLPCFALIFLDELDCWKPPNFIEFGRPKFPK
IQIFQLRKAVARAASEKVCSRVLAPRQRRPSVAALKCVSEILLSGFSVAVAPSKRHSARMRFSKDASRQRHLGAAMLLCVQNHALMFQRRGAIPKICPFWFFNSFLPYSC
SVLIF

Clc11G10110 (gene) of Watermelon (cordophanus) v2 genome