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Clc11G10290 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G10290
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLate embryogenesis abundant protein family protein, putative
Genome locationClcChr11:15548414..15550808
RNA-Seq ExpressionClc11G10290
SyntenyClc11G10290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598970.1 hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4167.07Show/hide
Query:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA
        M S TLFKSLPKF      AI +RS TSN +L+ ASNPKSIH +     S          EAKDAINP ANEGM PGE+MM+DKAYSTAEHVSEKT DMA
Subjt:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA

Query:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        GM+SA+A EVSAKAK+AMEA    AKD+A RAK T+V+T KDSK+FVKANAK+VEK MNTKNRS
Subjt:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

XP_022933143.1 uncharacterized protein At4g13230 [Cucurbita moschata]3.3e-4167.07Show/hide
Query:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA
        M SSTLFKSLPKF      AI +RS TSN +L+ ASNPK IH +     S          EAKDAINP ANEGM PGE+MM+DKAYSTAEHVSEKT DMA
Subjt:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA

Query:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        GM+SA+A EVSAKAK+AMEA    AKD+A RAK T+V+T KDSK+FVKANAK+VEK MNTKNRS
Subjt:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

XP_022973925.1 uncharacterized protein At4g13230 [Cucurbita maxima]5.2e-3966.46Show/hide
Query:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA
        M SSTLFKSLPKF     A I  RS TSN +L  ASNPK IH +     S          EAKDAINP ANEGM  GE MM+DKAYSTAEHVSEKT DMA
Subjt:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA

Query:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        GM+SA+A EVSAKAKQAMEA    AKD+A RAK ++V+T KDSK+FVKANAK+VEK MNTKNRS
Subjt:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

XP_023546410.1 uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]7.3e-4166.46Show/hide
Query:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA
        M SSTLFKSLPKF      AI +RS TSN +L+ ASNPKSIH +                EAKDAI P ANEGM PGE+MM+DKAYSTAEHVSEKT DMA
Subjt:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA

Query:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        GM+SA+A EVSAKAK+AMEA    AKD+A RAK T+V+T KDSK+FVKANAK+VEK MNTKNRS
Subjt:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

XP_038889268.1 uncharacterized protein At4g13230-like [Benincasa hispida]8.9e-5580.37Show/hide
Query:  MASSTLFKSLPK---FVAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAG
        MASSTLFK+LPK   F AAIT+RSTTSN TLILASNPK IH ++    S          EAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKT DMAG
Subjt:  MASSTLFKSLPK---FVAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAG

Query:  MVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        MVSAKAH VSAKAKQAMEAAWDSAKDTAQRAK TLVDTA DSK+FVKAN KSVEKSMNTKN S
Subjt:  MVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

TrEMBL top hitse value%identityAlignment
A0A2N9J2L7 Uncharacterized protein2.0e-2348.75Show/hide
Query:  MASSTLFKSLPKF--VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGM
        MAS +L   LPKF    A   R  T NP L +ASNP+ I  S     S+ + S+     A DA+  GAN+    G+  +K+KA+STAEHV++KT DMAGM
Subjt:  MASSTLFKSLPKF--VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGM

Query:  VSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN
        +SA A +V+ KAKQ  + AW +AKDTAQ+AK T++  A++SKE +K NA++V++SMNTKN
Subjt:  VSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN

A0A6J1CSM2 uncharacterized protein At4g13230-like3.8e-3562.35Show/hide
Query:  MASSTLFKSLPKFV---AAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAG
        MAS TL K+LPKF    AAI +RST SNP L+L SNPK +H       S  D       EAKDAINPGANE MMPGE+MM + AYSTA+HV EK  DM G
Subjt:  MASSTLFKSLPKFV---AAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAG

Query:  MVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNR
        MV +   E+S KAKQ MEAAWDS    AQRAK T+V+  K+SKEFVKANA+SV+KSMNTKNR
Subjt:  MVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNR

A0A6J1F3W7 uncharacterized protein At4g132301.6e-4167.07Show/hide
Query:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA
        M SSTLFKSLPKF      AI +RS TSN +L+ ASNPK IH +     S          EAKDAINP ANEGM PGE+MM+DKAYSTAEHVSEKT DMA
Subjt:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA

Query:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        GM+SA+A EVSAKAK+AMEA    AKD+A RAK T+V+T KDSK+FVKANAK+VEK MNTKNRS
Subjt:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

A0A6J1ICL4 uncharacterized protein At4g132302.5e-3966.46Show/hide
Query:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA
        M SSTLFKSLPKF     A I  RS TSN +L  ASNPK IH +     S          EAKDAINP ANEGM  GE MM+DKAYSTAEHVSEKT DMA
Subjt:  MASSTLFKSLPKF----VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMA

Query:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS
        GM+SA+A EVSAKAKQAMEA    AKD+A RAK ++V+T KDSK+FVKANAK+VEK MNTKNRS
Subjt:  GMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRS

A0A7N2KQQ7 Uncharacterized protein5.3e-2148.45Show/hide
Query:  MASSTLFKSLPKF---VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAG
        MAS TL  SLPKF    +AI +RST  NP L  A  P+ I  S   + S         + A DA+  GANE    GE  +KDKA STAEHVS+ T DMAG
Subjt:  MASSTLFKSLPKF---VAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAG

Query:  MVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN
         +SA A +V+ K KQ  + AW SAKDTAQ+AK  ++   ++SKE +K +A++V+ SMNTKN
Subjt:  MVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN

SwissProt top hitse value%identityAlignment
Q8LFD5 Uncharacterized protein At4g132306.5e-0842.5Show/hide
Query:  DKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN
        DKA    + V++K  + A  +S  A  +  KAK   E AWD  KDT ++ K T+    +++KE +KA AK+VE+SMNTKN
Subjt:  DKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN

Arabidopsis top hitse value%identityAlignment
AT4G13230.1 Late embryogenesis abundant protein (LEA) family protein4.6e-0942.5Show/hide
Query:  DKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN
        DKA    + V++K  + A  +S  A  +  KAK   E AWD  KDT ++ K T+    +++KE +KA AK+VE+SMNTKN
Subjt:  DKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKN

AT5G44310.1 Late embryogenesis abundant protein (LEA) family protein9.0e-0532.99Show/hide
Query:  KTSHLDESTTRWAE-AKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDS
        K   + E T  +AE  KD +N GA+      E   KDKA   AE   EK  DMA     KA ++  K    ++  W++AK TAQ+    +V + +++
Subjt:  KTSHLDESTTRWAE-AKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDS

AT5G44310.2 Late embryogenesis abundant protein (LEA) family protein9.0e-0532.99Show/hide
Query:  KTSHLDESTTRWAE-AKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDS
        K   + E T  +AE  KD +N GA+      E   KDKA   AE   EK  DMA     KA ++  K    ++  W++AK TAQ+    +V + +++
Subjt:  KTSHLDESTTRWAE-AKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKAKQAMEAAWDSAKDTAQRAKHTLVDTAKDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTCCACCCTCTTCAAAAGCCTTCCAAAGTTTGTTGCTGCAATTACAAAAAGATCAACAACCTCCAACCCTACTCTCATTTTGGCTTCTAACCCTAAATCTAT
TCACGTAAGTATTGTCTACAAGACTTCACATTTAGACGAGTCCACCACAAGATGGGCAGAAGCCAAAGATGCCATAAACCCAGGAGCAAATGAAGGAATGATGCCTGGTG
AAAATATGATGAAAGATAAGGCTTACTCCACTGCAGAACATGTGAGTGAAAAGACAATGGATATGGCAGGAATGGTAAGTGCAAAAGCACATGAGGTTTCAGCAAAGGCA
AAGCAAGCAATGGAAGCAGCATGGGACTCAGCAAAGGACACAGCCCAAAGGGCAAAACACACATTGGTTGACACTGCCAAAGACTCCAAGGAATTTGTCAAAGCAAATGC
TAAGTCTGTTGAGAAGAGCATGAACACCAAGAACCGTTCTTATATCCCATTAACCCTCTTCTCAAACTTACACTTTACTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTCCACCCTCTTCAAAAGCCTTCCAAAGTTTGTTGCTGCAATTACAAAAAGATCAACAACCTCCAACCCTACTCTCATTTTGGCTTCTAACCCTAAATCTAT
TCACGTAAGTATTGTCTACAAGACTTCACATTTAGACGAGTCCACCACAAGATGGGCAGAAGCCAAAGATGCCATAAACCCAGGAGCAAATGAAGGAATGATGCCTGGTG
AAAATATGATGAAAGATAAGGCTTACTCCACTGCAGAACATGTGAGTGAAAAGACAATGGATATGGCAGGAATGGTAAGTGCAAAAGCACATGAGGTTTCAGCAAAGGCA
AAGCAAGCAATGGAAGCAGCATGGGACTCAGCAAAGGACACAGCCCAAAGGGCAAAACACACATTGGTTGACACTGCCAAAGACTCCAAGGAATTTGTCAAAGCAAATGC
TAAGTCTGTTGAGAAGAGCATGAACACCAAGAACCGTTCTTATATCCCATTAACCCTCTTCTCAAACTTACACTTTACTTTTTAA
Protein sequenceShow/hide protein sequence
MASSTLFKSLPKFVAAITKRSTTSNPTLILASNPKSIHVSIVYKTSHLDESTTRWAEAKDAINPGANEGMMPGENMMKDKAYSTAEHVSEKTMDMAGMVSAKAHEVSAKA
KQAMEAAWDSAKDTAQRAKHTLVDTAKDSKEFVKANAKSVEKSMNTKNRSYIPLTLFSNLHFTF