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Clc11G10580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G10580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr11:16275968..16277128
RNA-Seq ExpressionClc11G10580
SyntenyClc11G10580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]3.5e-1961.9Show/hide
Query:  MEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGV
        MEDA++VL + G KW VS   + TL++ SL  E  LWVYLVKKR I TTHDKTVSRDRVMA YCI+R I +DVG++IA Q+R +
Subjt:  MEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGV
XP_038904385.1 uncharacterized protein LOC120090747 [Benincasa hispida]2.4e-2059.14Show/hide
Query:  ELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQ
        E MEDA+R L + G +W VS   IKTL++S L PEA LWVYLVK+R IPT+HDKTVSRDRVMAAYCI   I +DV  +IAAQ +    + + Q
Subjt:  ELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQ
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGC
AAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCC
TTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATC
GGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCC
TGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCA
TTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCT
TCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTAT
GCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAAC
TGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATG
GAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGT
ACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGC
AAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCC
TTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATC
GGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCC
TGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCA
TTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCT
TCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTAT
GCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAAC
TGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATG
GAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGT
ACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA
Protein sequenceShow/hide protein sequence
MELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNLYANASI
GGPTEVLDAEKMIEVSGVIAHKTLRWLMRGSQHLPEPAKATKRPHQPILPPKPQPQKKGKPSKLKAVANPDATIRPSPTSSPSPPLPTTRREPTPTPPPPKTHRPKPPPP
SHKTHRPKHPKPRPSTKPSAPIRVDDSHFGDLGATVMRPLSPAFDETPSTPPPQPNPSTPPQPNSPTPPTQPQLQEGQLDLEWETVQTYLQQSILRPVMHSLNMLAHRQM
EQFQFTLNYVHQMLSIRPEIPPPDIPERLQQPLVFPVPQRPAPEQQRRPNEDETDG