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Clc11G10760 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G10760
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr11:16392965..16393333
RNA-Seq ExpressionClc11G10760
SyntenyClc11G10760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833156.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.2e-5387.7Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN
        MDFEKA EKRLLELNEMEEF A+AYENAKLYK+RTARWHDKKITP TFLP QR+LLFNSRLRLFPGKL+TRWSGPFI+VKVSPH AVELQGN+GTTFKVN
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN

Query:  GQRLKHYIGDEERGFENLAFIA
        G RLKHYIGDEER  ENLAF A
Subjt:  GQRLKHYIGDEERGFENLAFIA

XP_030498073.1 uncharacterized protein LOC115713732 [Cannabis sativa]1.9e-3567.57Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN
        M+ + A EKRLL+LNE+EEF  EAYENAK+YKERT +WHD+ +  + F PGQ+VLLFNSRL+LFPGKLK+RWSGPF VVKV P+ AVEL+G+   TFKVN
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN

Query:  GQRLKHYIGDE
        GQRLK Y+G +
Subjt:  GQRLKHYIGDE

XP_030502743.1 uncharacterized protein LOC115717916 [Cannabis sativa]2.5e-3568.81Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN
        MD + A +KRLL+L+E+EEF  EAYENAK+YKERT RWHD+ +  + F PGQ+VLLFNSRL+LFPGKLK+RWSGPF VVKV P+ AVEL+G    TFKVN
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN

Query:  GQRLKHYIG
        GQRLK Y+G
Subjt:  GQRLKHYIG

XP_038885822.1 uncharacterized protein LOC120076116 [Benincasa hispida]1.1e-4074.36Show/hide
Query:  EKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVNGQR
        +K  EKRLLEL E+EEF  +AYENAKLYKER ARWHDKKI   TF  GQ VLLFNSRLRLFP KL+TRW GPF+VVK SPH AVE+QG DG  FKVNGQR
Subjt:  EKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVNGQR

Query:  LKHYIGDEERGFENLAF
        L+HY GDEER  ENL F
Subjt:  LKHYIGDEERGFENLAF

XP_038885946.1 uncharacterized protein LOC120076251 [Benincasa hispida]7.4e-4072.07Show/hide
Query:  DFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVNG
        D + A + RLL+LNEMEEF  +AYEN+K+YKERT +WHD  I PR FLPGQRVLLFNSRLRLFPGKLK+RW GPF++  V+P++AVEL G DGTTFKVN 
Subjt:  DFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVNG

Query:  QRLKHYIGDEE
        QRLKHY GDEE
Subjt:  QRLKHYIGDEE

TrEMBL top hitse value%identityAlignment
A0A1S4DFS8 uncharacterized protein LOC1078293656.6e-3467.86Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGT-TFKV
        MD + A EKRLL+LNE++EF   AYENAKLYK +T RWHDK I  R F PGQ VLLFNSRL+LFPGKLK+RWSGPF+VV V PH AVEL+    T TF V
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGT-TFKV

Query:  NGQRLKHYIGDE
        NGQR+KHY G +
Subjt:  NGQRLKHYIGDE

A0A1U7YP28 uncharacterized protein LOC1042490656.6e-3466.36Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQG-NDGTTFKV
        MD + A EK+L++LNE++EF   +YENAKLYKE+T RWHDK I PR F PGQ+VLLFNSRLRLFPGKLK+RWSGPF VV+V+P+ A+EL+  N G  F V
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQG-NDGTTFKV

Query:  NGQRLKHYIG
        NG R+KHY G
Subjt:  NGQRLKHYIG

A0A2G9H400 Reverse transcriptase1.5e-3366.97Show/hide
Query:  DFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQG-NDGTTFKVN
        D + A EKRLL+LNE++EF  +AYENAK+YKE+T RWHDKKI  R F PGQ VLLFNSRL+LFPGKLK+RWSGPF + +V PH AVEL+  N    FKVN
Subjt:  DFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQG-NDGTTFKVN

Query:  GQRLKHYIG
         QR+KHY G
Subjt:  GQRLKHYIG

A0A6P4D1N6 uncharacterized protein LOC1074845091.1e-3363.39Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGN-DGTTFKV
        +D + A EKRLL+LNE+EEF  EAYENA++YKER  RWHDK+I+ RTF PGQRVLLFNSRL++FPGKL++RW+GP+ ++KVSPH  VEL       TF  
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGN-DGTTFKV

Query:  NGQRLKHYIGDE
        NG R+KHY G E
Subjt:  NGQRLKHYIGDE

A0A6P6SHX4 uncharacterized protein LOC1136916591.1e-3366.07Show/hide
Query:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN
        MDF  A EKRLLELNE+EE    AYENAK+YKE+   WHDK I P+ F  GQ VLLFNSRLRLFPGKLK+RWSGPF V +V P+ AVE++G +G  FKVN
Subjt:  MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVN

Query:  GQRLKHYIGDEE
        GQRLK Y+  E+
Subjt:  GQRLKHYIGDEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCGAGAAAGCCAGTGAGAAACGCCTCTTAGAACTCAATGAGATGGAGGAGTTCTGTGCTGAAGCGTATGAGAATGCCAAACTTTACAAAGAGCGCACTGCAAG
ATGGCATGACAAGAAGATCACCCCACGGACCTTCCTTCCTGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGAAAGCTTAAGACACGATGGTCAG
GACCCTTTATCGTTGTCAAGGTATCCCCACACGAAGCCGTGGAACTACAAGGCAATGATGGAACAACCTTCAAAGTGAACGGTCAACGATTGAAGCACTACATCGGTGAT
GAAGAACGCGGATTTGAGAACCTGGCTTTCATTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCGAGAAAGCCAGTGAGAAACGCCTCTTAGAACTCAATGAGATGGAGGAGTTCTGTGCTGAAGCGTATGAGAATGCCAAACTTTACAAAGAGCGCACTGCAAG
ATGGCATGACAAGAAGATCACCCCACGGACCTTCCTTCCTGGACAAAGAGTATTACTTTTTAACTCACGTTTACGCTTGTTTCCAGGAAAGCTTAAGACACGATGGTCAG
GACCCTTTATCGTTGTCAAGGTATCCCCACACGAAGCCGTGGAACTACAAGGCAATGATGGAACAACCTTCAAAGTGAACGGTCAACGATTGAAGCACTACATCGGTGAT
GAAGAACGCGGATTTGAGAACCTGGCTTTCATTGCATGA
Protein sequenceShow/hide protein sequence
MDFEKASEKRLLELNEMEEFCAEAYENAKLYKERTARWHDKKITPRTFLPGQRVLLFNSRLRLFPGKLKTRWSGPFIVVKVSPHEAVELQGNDGTTFKVNGQRLKHYIGD
EERGFENLAFIA