; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G10780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G10780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr11:16398122..16398973
RNA-Seq ExpressionClc11G10780
SyntenyClc11G10780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833202.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]7.9e-5358.1Show/hide
Query:  LEADAATNLSAQIANMISLLE-IAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQ
        +E DA +NLSAQIANM SLL+ IA NNQG  VA+++A++ +N+TASV C+QCG GHLYDM  YN QS+C VQNN Y +TYN GWRNH +FGWG N QQTQ
Subjt:  LEADAATNLSAQIANMISLLE-IAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQ

Query:  RAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIA
         AEQQ QRGNPP FN+ NQGQYHQF RDPQADAS S                            YS+E+L+RE  S  DAM QSQ  A  NLEV M Q+ 
Subjt:  RAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIA

Query:  EALENEKHGA
         ALENE+ GA
Subjt:  EALENEKHGA

XP_038876668.1 uncharacterized protein LOC120069060 [Benincasa hispida]2.5e-3035.96Show/hide
Query:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSY
        TY+ A+ + +R   NT +WVDDGY  R   RR+     + AD    L+ Q+  + SLL++   NQG    +    +A    A++ C+QCG GH  +M   
Subjt:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSY

Query:  NLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQ----TQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYD
        N Q + S+Q NLY  TYNLGW NH +FGWG N  Q      +      RGNPP F++ NQ Q     R PQ   S S +S++S                 
Subjt:  NLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQ----TQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYD

Query:  AMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQC
              S+E+L+++Y  K+D ++Q Q ++IRNLE+Q+ Q A  L N     L S +E    + KEQC
Subjt:  AMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQC

XP_038885789.1 uncharacterized protein LOC120076081 [Benincasa hispida]3.2e-3040.09Show/hide
Query:  TNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQ--
        T L AQ+A + SLL+    NQG    +    +A+   A +  +QC  GHL ++Y  N Q + S+ N  +G TYN GWRNH +F WGGNH Q  +   Q  
Subjt:  TNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQ--

Query:  --LQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEAL
            RGNPP F   NQ Q +  S  P+   S S +S             +TS          S+ETL+++Y  K++A+ QSQA++IRNLEVQ+ Q+A  L
Subjt:  --LQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEAL

Query:  ENEKHGALLSTTEVPRWNSKEQCQGETLLSGK
        +N+  G L S++E P  + KEQCQ  TL SGK
Subjt:  ENEKHGALLSTTEVPRWNSKEQCQGETLLSGK

XP_038887219.1 uncharacterized protein LOC120077408 [Benincasa hispida]9.5e-3033.33Show/hide
Query:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSY
        +Y+ A+ + +  S N++EW+D G E R   + + +  ++  D    L  Q+  M SLL+   N Q         V+A+   A+++C+QCG GHL ++Y +
Subjt:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSY

Query:  NLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQL----QRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYD
        N Q + S+ N+ +G TYN GW+NH  F W  NH Q  +++ Q      RGNPP F   NQ       +  Q    P  S                    D
Subjt:  NLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQL----QRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYD

Query:  AMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGK
        + +   S+ETL++ Y    +A+ QS A+++R LE Q+ Q+A  L+N+ HG L S++ V     KEQCQ  TL SGK
Subjt:  AMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGK

XP_038902511.1 uncharacterized protein LOC120089170 [Benincasa hispida]1.4e-3636.84Show/hide
Query:  YSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYN
        Y+ A+ + +R   NT++WVD+GY  R   RR+ ++ ++  D  T L+AQ+A + SLL++   N G         + +   A + C QCG GH  +M   N
Subjt:  YSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYN

Query:  LQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQ---LQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAM
         Q++ S+QNN Y  TYN GWRNH +F WGGN+ Q  +   Q     RGNPP F++     +HQ  +     +S + S+  S                   
Subjt:  LQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQ---LQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAM

Query:  FQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQ
            S+E L+++Y  K+DA++QSQA++IRNLEVQM Q+A  L N   G + S +E P  N KEQCQ
Subjt:  FQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQ

TrEMBL top hitse value%identityAlignment
A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129452.4e-1530.66Show/hide
Query:  AEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQS
        A +L    + N  +W  +    RS +R+    G  E DA   L+ Q+A +   L+               VHA+ ++  V C  CG  H YD   YN +S
Subjt:  AEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQS

Query:  ICSV------QNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAM
        +  V      QNN Y  TYN GWRNH +F W  N   +           PP F               Q  A P +   +S L E               
Subjt:  ICSV------QNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAM

Query:  FQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGK
                L+ +Y SK DA++QSQ  ++RNLE Q+ Q+A ++ N   G+L S T++     KEQCQ  TL SGK
Subjt:  FQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGK

A0A6J1BDW4 uncharacterized protein LOC1104265843.2e-1531.82Show/hide
Query:  NTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSV------
        N  +W  +    RS +R+    G  E DA   L+ Q+A +   L+               VHA+ ++  V C  CG  H YD   YN +S+  V      
Subjt:  NTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSV------

Query:  QNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLV
        QNN Y  TYN GWRNH +F W  N   +           PP F        HQ        A P +S  +S L E                       L+
Subjt:  QNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLV

Query:  REYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGK
         +Y SK DA++QSQ  ++RNLE Q+ Q+A ++ N   G+L S T++     KEQCQ  TL SGK
Subjt:  REYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGK

A0A6J1EEI2 uncharacterized protein LOC1114333941.4e-1530.04Show/hide
Query:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLE-IAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYS
        TY+ A ++  R + N  +W D     RS   R+T+ G+LE DA ++++AQ+A++ ++L+ +A        A ++ V  +N TA+  C+ CG  H +D   
Subjt:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLE-IAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYS

Query:  YNLQSICSV---------QNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEA
         N  SI  V         +NN +  TYN GWRNH +F W G  Q +   +   +   PP F   NQ  Y     + Q    P                  
Subjt:  YNLQSICSV---------QNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEA

Query:  TSQSYDAMFQI-YSMETLVREYTSKHDAMLQSQATAIRNLEVQ
              A + +  S+E+L++EY +K+D ++Q+Q  ++RNLEVQ
Subjt:  TSQSYDAMFQI-YSMETLVREYTSKHDAMLQSQATAIRNLEVQ

A0A6J1EQ90 uncharacterized protein LOC1114364115.8e-1728.52Show/hide
Query:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLE-IAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYD---
        TY+ A ++  R + N  +W D     RS   R+T+ G+LE DA ++++AQ+A++ ++L+ +A        A ++   A+N TA+  C+ CG  H +D   
Subjt:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLE-IAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYD---

Query:  ------MYSYNLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEA
               Y  N  S  +++NN +  TYN GWRNH +F W G  Q     +   +   P  F   NQ  Y                S + +  +  G  +A
Subjt:  ------MYSYNLQSICSVQNNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEA

Query:  TSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTE-------VPRWNSKEQCQGETLLSGKINPTAHNEE
           S        S+E+L++EY +K+DA++QSQ  ++RNLEVQ+     A + + H    + T+       V + +SK+  + E     K+  TA +E+
Subjt:  TSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTE-------VPRWNSKEQCQGETLLSGKINPTAHNEE

A0A6J1G7Q6 uncharacterized protein LOC1114515985.8e-1729.89Show/hide
Query:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPV-AAINAVHAMNSTASVHCLQCGAGHLYDMYS
        TY+ A ++  R + N  +WVD     RS   ++T+  +LE DA ++++AQ+A+M ++L+     QG  + A  +    M  TA+  C+ CG  H +D   
Subjt:  TYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPV-AAINAVHAMNSTASVHCLQCGAGHLYDMYS

Query:  YNLQSICSVQN---------NLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEA
         N  SI  V N         N    TYN GWRNH +F   G  Q +   +   +   PP F   NQ  Y       Q + +     +   L         
Subjt:  YNLQSICSVQN---------NLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEA

Query:  TSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKE
                     +E+L++EY +++DA++QSQ  ++RNLEVQ+ Q+A  L N   G L + TE+P+    E
Subjt:  TSQSYDAMFQIYSMETLVREYTSKHDAMLQSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTACTCATATGCCGAAGATCTTTTCAACAGAACTTCATGGAACACCAATGAGTGGGTGGACGATGGATATGAATTTCGCTCCACCAATAGAAGGCAAACGCAAGC
TGGAATGCTTGAAGCTGATGCTGCTACCAATCTCTCAGCGCAGATAGCAAACATGATATCTTTGCTGGAGATAGCCTGGAATAATCAAGGTAGACCAGTTGCTGCGATAA
ACGCAGTGCACGCGATGAACTCGACAGCATCTGTACACTGCCTGCAGTGTGGTGCAGGGCACTTGTATGACATGTATTCCTACAACCTCCAGTCTATCTGCAGTGTTCAA
AACAACCTCTACGGTGAGACGTACAATTTGGGTTGGAGAAACCACTTCGACTTCGGATGGGGTGGAAATCATCAACAAACGCAGAGGGCTGAGCAGCAGCTGCAGAGAGG
CAATCCTCCTTGTTTCAACCGATGGAATCAAGGCCAATATCATCAGTTTTCGAGGGATCCACAAGCGGACGCATCACCCTCATTGTCTTCCATGGAATCTCTTTTACGAG
AAGATAACGGTAACATTGAAGCAACGAGCCAGTCGTACGATGCGATGTTCCAAATCTACTCCATGGAAACTCTCGTACGAGAATATACATCTAAACACGATGCGATGCTC
CAAAGCCAAGCCACTGCGATTCGCAATTTAGAAGTTCAAATGAATCAAATTGCAGAGGCACTCGAAAATGAAAAGCACGGAGCATTGCTAAGTACGACCGAAGTTCCAAG
ATGGAACTCGAAAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGCGCATAATGAGGAGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTACTCATATGCCGAAGATCTTTTCAACAGAACTTCATGGAACACCAATGAGTGGGTGGACGATGGATATGAATTTCGCTCCACCAATAGAAGGCAAACGCAAGC
TGGAATGCTTGAAGCTGATGCTGCTACCAATCTCTCAGCGCAGATAGCAAACATGATATCTTTGCTGGAGATAGCCTGGAATAATCAAGGTAGACCAGTTGCTGCGATAA
ACGCAGTGCACGCGATGAACTCGACAGCATCTGTACACTGCCTGCAGTGTGGTGCAGGGCACTTGTATGACATGTATTCCTACAACCTCCAGTCTATCTGCAGTGTTCAA
AACAACCTCTACGGTGAGACGTACAATTTGGGTTGGAGAAACCACTTCGACTTCGGATGGGGTGGAAATCATCAACAAACGCAGAGGGCTGAGCAGCAGCTGCAGAGAGG
CAATCCTCCTTGTTTCAACCGATGGAATCAAGGCCAATATCATCAGTTTTCGAGGGATCCACAAGCGGACGCATCACCCTCATTGTCTTCCATGGAATCTCTTTTACGAG
AAGATAACGGTAACATTGAAGCAACGAGCCAGTCGTACGATGCGATGTTCCAAATCTACTCCATGGAAACTCTCGTACGAGAATATACATCTAAACACGATGCGATGCTC
CAAAGCCAAGCCACTGCGATTCGCAATTTAGAAGTTCAAATGAATCAAATTGCAGAGGCACTCGAAAATGAAAAGCACGGAGCATTGCTAAGTACGACCGAAGTTCCAAG
ATGGAACTCGAAAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGCGCATAATGAGGAGACGTAG
Protein sequenceShow/hide protein sequence
MTYSYAEDLFNRTSWNTNEWVDDGYEFRSTNRRQTQAGMLEADAATNLSAQIANMISLLEIAWNNQGRPVAAINAVHAMNSTASVHCLQCGAGHLYDMYSYNLQSICSVQ
NNLYGETYNLGWRNHFDFGWGGNHQQTQRAEQQLQRGNPPCFNRWNQGQYHQFSRDPQADASPSLSSMESLLREDNGNIEATSQSYDAMFQIYSMETLVREYTSKHDAML
QSQATAIRNLEVQMNQIAEALENEKHGALLSTTEVPRWNSKEQCQGETLLSGKINPTAHNEET