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Clc11G10810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G10810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr11:16402967..16403410
RNA-Seq ExpressionClc11G10810
SyntenyClc11G10810
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-3149.33Show/hide
Query:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK
        MP+G  R +   A  S+A  E       S+ ESS P    N+EEQL  R+AQRL+  +   Q D EKK+GIER KALGA  F GTT+P +AE WL  +EK
Subjt:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK

Query:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
        CF+V  C EDRK++L  F+LQ GAEDWW + E R    G + W +FKK+F
Subjt:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]7.6e-3150Show/hide
Query:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK
        MPRG  R +   A  S+A  E       S+ ESS P+   N+EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTT+P + EAWL  +EK
Subjt:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK

Query:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
        CFRV    EDRK++L  F+LQ  AEDWWR+ E R    G ++W +FKK+F
Subjt:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF

XP_038882393.1 uncharacterized protein LOC120073661 [Benincasa hispida]1.5e-3157.26Show/hide
Query:  SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAED
        SEGES  PQ  A   +E+ +F +I QRLV SM + + D EKK+GIERFKALGA  FEGTTDPAE E WL+ VEKCF VM C EDRK+ L TF+LQK AE 
Subjt:  SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAED

Query:  WWRLIEHRSADAGSLTWADFKKSF
        WW++I  R      + W +F+K+F
Subjt:  WWRLIEHRSADAGSLTWADFKKSF

XP_038887090.1 uncharacterized protein LOC120077268 [Benincasa hispida]6.9e-3254.92Show/hide
Query:  SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAED
        SEGES+ PQ  A   +++ +  +IAQRL TS+ +++ D+EKK+GIERFKALGA  FEGT +PAEAE WL+ VEKCF +M+CPE+RK+ L TF+LQKGAE 
Subjt:  SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAED

Query:  WWRLIEHRSADAGSLTWADFKK
        WW++I  R A   ++ W +F++
Subjt:  WWRLIEHRSADAGSLTWADFKK

XP_038890030.1 uncharacterized protein LOC120079741 [Benincasa hispida]2.4e-3258.54Show/hide
Query:  SEGESSNPQAS--MNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAED
        SEGESS PQA     +E+ +F RI QRL  S+  ++ +LEKK+ IERFKALGA  FEGTTDP EAE WL+ VEKCF VM CPEDRK+ L TF+LQK AE 
Subjt:  SEGESSNPQAS--MNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAED

Query:  WWRLIEHRSADAGSLTWADFKKS
        WW++I  R A   ++ W +FKK+
Subjt:  WWRLIEHRSADAGSLTWADFKKS

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.3e-3149.33Show/hide
Query:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK
        MP+G  R +   A  S+A  E       S+ ESS P    N+EEQL  R+AQRL+  +   Q D EKK+GIER KALGA  F GTT+P +AE WL  +EK
Subjt:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK

Query:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
        CF+V  C EDRK++L  F+LQ GAEDWW + E R    G + W +FKK+F
Subjt:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF

A0A5A7T1M0 Reverse transcriptase1.5e-2948.67Show/hide
Query:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK
        MPRG  R +   A  S+A  E       S+ ESS P+   N+EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTT+P + EAWL  +EK
Subjt:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK

Query:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
        CFRV    EDRK++L  F+LQ  AEDWWR+ E R    G++T A+++K +
Subjt:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF

A0A5A7U067 Retrotrans_gag domain-containing protein2.4e-3050.33Show/hide
Query:  MPRGTRR----GRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVE
        MPRG  R         AA   A G E   S+ ESS     +N+EEQL  R+AQ LV+ + + Q +LEK F IER KALGA  F GTT+ A+AEAWL  +E
Subjt:  MPRGTRR----GRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVE

Query:  KCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
        KCF+VM C EDRK++LV F+L+ G EDWWRL E R      ++W +FKK+F
Subjt:  KCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF

A0A5D3BB91 Reverse transcriptase3.7e-3150Show/hide
Query:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK
        MPRG  R +   A  S+A  E       S+ ESS P+   N+EEQL  R+AQRLV+ + + Q D EKK+G ER KALGA  F GTT+P + EAWL  +EK
Subjt:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK

Query:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
        CFRV    EDRK++L  F+LQ  AEDWWR+ E R    G ++W +FKK+F
Subjt:  CFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF

A0A5D3DES5 DNA/RNA polymerases superfamily protein8.2e-3150.32Show/hide
Query:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK
        MPRG  R +   A TS+A  E       S+ ESS P    NMEEQL  R+AQRL++ + + Q D EKK+GIER KALGA  F GTT+PA+AEAWL  +EK
Subjt:  MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEK

Query:  CFRVMHCPEDRKLDLVTFMLQKG----AEDWWRLIEHR---SADAGSLTWADFKKSF
        CFRV  CPEDRK++L +F+LQ G     EDWWR+ E R   ++D  S+T   ++K +
Subjt:  CFRVMHCPEDRKLDLVTFMLQKG----AEDWWRLIEHR---SADAGSLTWADFKKSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTAT
GAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCAT
TGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTT
GACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATT
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTAT
GAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCAT
TGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTT
GACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATT
CTAG
Protein sequenceShow/hide protein sequence
MPRGTRRGRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKL
DLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF