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Clc11G10940 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G10940
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr11:16482415..16484126
RNA-Seq ExpressionClc11G10940
SyntenyClc11G10940
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017221442.1 PREDICTED: uncharacterized protein LOC108198185 [Daucus carota subsp. sativus]2.6e-1665.22Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIPPPLED
        LHINIPLVEALEQMP Y KF+K IL+KKR +GE+ETIALT+EC   +  ++  KMKDPG+FTIP  + D
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIPPPLED

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]3.4e-1663.77Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIPPPLED
        LHINIPLVEALEQMP Y KF+K IL+KKR +GE+ET+ALT+EC   +  ++  KMKDPG+FTIP  + D
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIPPPLED

XP_024022362.1 uncharacterized protein LOC112091881 [Morus notabilis]1.2e-1665.22Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIPPPLED
        LHINIPLVEALEQMP+Y KF+K ILSKKR +GE+ET+ALT+EC  ++  R+  K+KDPG+FTIP  + D
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIPPPLED

XP_024962579.1 uncharacterized protein LOC112502810 [Cynara cardunculus var. scolymus]1.2e-1668.75Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LHINIPLVEALEQMP+Y KFLKYIL+KKR + E+ET++LT+EC  ++  +IL K+KDPG+FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

XP_030509134.1 uncharacterized protein LOC115723804 [Cannabis sativa]3.4e-1670.31Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LHINIPLVEALEQMPTY KFLK IL+KKR +GE+ET+ALT+ C  M+  +I  K+KDPG+FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

TrEMBL top hitse value%identityAlignment
A0A2G9FWY3 Reverse transcriptase6.3e-1664.06Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LHINIP  EALEQMP+Y KF+K ILSKKR +G+YET+ALT+EC  ++  ++  K+KDPG+FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

A0A2G9IA86 DNA-directed DNA polymerase4.8e-1664.06Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LHIN P  EALEQMP+Y KF+KYILSKKR +G+YET+ALT+EC  ++  ++  K+KDPG+FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

A0A6J1E2I2 uncharacterized protein LOC1110254152.2e-1665.62Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LH+NIPLVEALEQMP Y +FLK IL KKR +GEYET+A+++ C  ++  +IL KMKDPG FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

U5CTY8 Uncharacterized protein6.3e-1668.75Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LHINIPLVEALEQMP Y KFLK IL+KKR +GE+ET+ALT+ C  M+  +I  K+KDPG+FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

U5CWW5 Uncharacterized protein1.7e-1670.31Show/hide
Query:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP
        LHINIPLVEALEQMPTY KFLK IL+KKR +GE+ET+ALT+ C  M+  +I  K+KDPG+FTIP
Subjt:  LHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMKDPGTFTIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGTTGGTTATGATTGTAACCGCATAGGCTCGACGCATGGTCTCAACGCATGGGCTCAGCGCATAGGCTCGAC
GGATGGGTTTCCACTTGTCCTCGCAGCAGCTTCGTCTCTTCGTACTTCTATTTTGCACATCAACATCCCACTGGTGGAGGCATTGGAACAAATGCCCACCTATGCTAAAT
TCCTCAAGTACATACTATCTAAAAAGAGAGGAATGGGTGAATATGAGACCATTGCTCTAACTCAGGAGTGCGGTGACATGGTGTGTGAACGCATCCTCATAAAGATGAAA
GATCCAGGGACCTTCACCATTCCTCCTCCATTGGAGGACTTCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGTTGGTTATGATTGTAACCGCATAGGCTCGACGCATGGTCTCAACGCATGGGCTCAGCGCATAGGCTCGAC
GGATGGGTTTCCACTTGTCCTCGCAGCAGCTTCGTCTCTTCGTACTTCTATTTTGCACATCAACATCCCACTGGTGGAGGCATTGGAACAAATGCCCACCTATGCTAAAT
TCCTCAAGTACATACTATCTAAAAAGAGAGGAATGGGTGAATATGAGACCATTGCTCTAACTCAGGAGTGCGGTGACATGGTGTGTGAACGCATCCTCATAAAGATGAAA
GATCCAGGGACCTTCACCATTCCTCCTCCATTGGAGGACTTCACATAG
Protein sequenceShow/hide protein sequence
MLRILLSEELEMEVGYDCNRIGSTHGLNAWAQRIGSTDGFPLVLAAASSLRTSILHINIPLVEALEQMPTYAKFLKYILSKKRGMGEYETIALTQECGDMVCERILIKMK
DPGTFTIPPPLEDFT