; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G11060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G11060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr11:16547931..16548294
RNA-Seq ExpressionClc11G11060
SyntenyClc11G11060
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039476.1 uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]5.5e-0665Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL
        G  E+ Q DP+KK+GIER KALGA  F GTTNP + EAWL
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]2.2e-0772.5Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL
        G  E+ Q DPEKK+GIER KALGA  F GTTNPA+AEAWL
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL

KAA0063973.1 uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa]2.4e-0668.29Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLN
        G   + Q D EKKFGIER KALG   F GTTNPA+AEAWLN
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLN

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]5.5e-0665Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL
        G  E+ Q DP+KK+GIER KALGA  F GTTNP + EAWL
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL

XP_038877203.1 uncharacterized protein LOC120069501 [Benincasa hispida]1.9e-0669.23Show/hide
Query:  ETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQ
        E +Q DPEKK+GIER KALGA  FEGT +PA+AE W+NQ
Subjt:  ETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQ

TrEMBL top hitse value%identityAlignment
A0A5A7TBS0 CCHC-type domain-containing protein2.6e-0665Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL
        G  E+ Q DP+KK+GIER KALGA  F GTTNP + EAWL
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL

A0A5A7UZM6 Gag protease polyprotein-like protein1.1e-0772.5Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL
        G  E+ Q DPEKK+GIER KALGA  F GTTNPA+AEAWL
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL

A0A5D3C1T8 Uncharacterized protein1.2e-0668.29Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLN
        G   + Q D EKKFGIER KALG   F GTTNPA+AEAWLN
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLN

A0A5D3CTK6 CCHC-type domain-containing protein2.6e-0665Show/hide
Query:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL
        G  E+ Q DP+KK+GIER KALGA  F GTTNP + EAWL
Subjt:  GMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWL

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.6e-0645.57Show/hide
Query:  TVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQGLKTGGVSPVLNLVTKQGKKGPRDGRLGRSSWLECDWGGKK
        + Q DPEKK+GIER KALGA  F GTTNPA+AEAWL    K   V+           + P D ++  +S+L  + GG K
Subjt:  TVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQGLKTGGVSPVLNLVTKQGKKGPRDGRLGRSSWLECDWGGKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAATCCTAGGTATAGAGTGTATCTGGGATGGGGTATGACAGAAACAGTTCAGGGAGACCCTGAGAAAAAGTTTGGCATTGAACGATTTAAGGCGTTGGGTGCTCA
AGTGTTTGAAGGCACCACAAACCCTGCGGAAGCTGAAGCATGGTTAAATCAGGGGCTGAAGACTGGTGGTGTAAGCCCCGTACTTAATCTTGTGACAAAGCAAGGCAAGA
AGGGGCCAAGAGATGGACGCTTGGGTAGGAGTAGTTGGCTGGAATGTGATTGGGGCGGAAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAATCCTAGGTATAGAGTGTATCTGGGATGGGGTATGACAGAAACAGTTCAGGGAGACCCTGAGAAAAAGTTTGGCATTGAACGATTTAAGGCGTTGGGTGCTCA
AGTGTTTGAAGGCACCACAAACCCTGCGGAAGCTGAAGCATGGTTAAATCAGGGGCTGAAGACTGGTGGTGTAAGCCCCGTACTTAATCTTGTGACAAAGCAAGGCAAGA
AGGGGCCAAGAGATGGACGCTTGGGTAGGAGTAGTTGGCTGGAATGTGATTGGGGCGGAAAAAAATGA
Protein sequenceShow/hide protein sequence
MLNPRYRVYLGWGMTETVQGDPEKKFGIERFKALGAQVFEGTTNPAEAEAWLNQGLKTGGVSPVLNLVTKQGKKGPRDGRLGRSSWLECDWGGKK