; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G11320 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G11320
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlial fibrillary acidic protein-like
Genome locationClcChr11:17444158..17444763
RNA-Seq ExpressionClc11G11320
SyntenyClc11G11320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025321.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.6e-5558.71Show/hide
Query:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR
        ++KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    +E LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR
Subjt:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR

Query:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY
         AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+   ++E+GAEKLRQMA +ADQF+ QA TL+QG++PTR   +ELS FLGII Q LGRFGCY
Subjt:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY

Query:  H
        H
Subjt:  H

KAA0033848.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]6.2e-5256.52Show/hide
Query:  KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEH
        ++KN + LR+++ VL  E E  +E +      KEL+ ELE ++KV  +FQSAL EQ TS+Q+I A +E LQNS KEYK ++TE + +N LLQE V S EH
Subjt:  KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEH

Query:  QLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYL
        QLL+CRNAREVVT+D+A+LK E++E+ ADFA+WRDEY+++R  Y++V+GQ+EQG +KLR MA+ ADQF+ +   LQQ IVP +  S+ELSRFLGII  YL
Subjt:  QLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYL

Query:  GRFGCYH
        G FGCYH
Subjt:  GRFGCYH

KAA0046606.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.2e-4251Show/hide
Query:  KKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRN
        K+K   L ++ D L+ EA        +++++ +R+ + +AN    +E     ++K    +E LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR 
Subjt:  KKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRN

Query:  AREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
        AR+V+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   KELS FLGII Q LGRF CYH
Subjt:  AREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH

KAA0065294.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]5.5e-5658.71Show/hide
Query:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR
        M+KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    +E LQ+  +EYKSQL E + +N  LQ+ V S E QLL+CR
Subjt:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR

Query:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY
         AREV+ DDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   KELS FLGII Q LGRFGCY
Subjt:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY

Query:  H
        H
Subjt:  H

TYK27025.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]3.7e-4466.67Show/hide
Query:  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD
        +E LQ+S KEYKSQL EVE +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++AD
Subjt:  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD

Query:  QFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
        QF  QA TL+QG++PTR   KELS FLGII Q LGRFGCYH
Subjt:  QFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH

TrEMBL top hitse value%identityAlignment
A0A5A7SM49 Glial fibrillary acidic protein-like7.7e-5658.71Show/hide
Query:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR
        ++KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    +E LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR
Subjt:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR

Query:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY
         AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+   ++E+GAEKLRQMA +ADQF+ QA TL+QG++PTR   +ELS FLGII Q LGRFGCY
Subjt:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY

Query:  H
        H
Subjt:  H

A0A5A7TXA1 Glial fibrillary acidic protein-like5.7e-4351Show/hide
Query:  KKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRN
        K+K   L ++ D L+ EA        +++++ +R+ + +AN    +E     ++K    +E LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR 
Subjt:  KKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRN

Query:  AREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
        AR+V+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   KELS FLGII Q LGRF CYH
Subjt:  AREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH

A0A5A7VDD9 Glial fibrillary acidic protein-like2.6e-5658.71Show/hide
Query:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR
        M+KKNKRLLR++  LH E E +K  I +L+ E+E++N +   FQ+AL EQA SSQ+    +E LQ+  +EYKSQL E + +N  LQ+ V S E QLL+CR
Subjt:  MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCR

Query:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY
         AREV+ DDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++ADQF+ QA TL+QG++PTR   KELS FLGII Q LGRFGCY
Subjt:  NAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCY

Query:  H
        H
Subjt:  H

A0A5D3BQ93 Glial fibrillary acidic protein-like3.0e-5256.52Show/hide
Query:  KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEH
        ++KN + LR+++ VL  E E  +E +      KEL+ ELE ++KV  +FQSAL EQ TS+Q+I A +E LQNS KEYK ++TE + +N LLQE V S EH
Subjt:  KKKNKRLLRDVD-VLHNEAETQKEYI------KELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEH

Query:  QLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYL
        QLL+CRNAREVVT+D+A+LK E++E+ ADFA+WRDEY+++R  Y++V+GQ+EQG +KLR MA+ ADQF+ +   LQQ IVP +  S+ELSRFLGII  YL
Subjt:  QLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYL

Query:  GRFGCYH
        G FGCYH
Subjt:  GRFGCYH

A0A5D3DUN1 Glial fibrillary acidic protein-like1.8e-4466.67Show/hide
Query:  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD
        +E LQ+S KEYKSQL EVE +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEMS DF +W+DEY  LRR YD+  G++E+GAEKLRQMA++AD
Subjt:  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD

Query:  QFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH
        QF  QA TL+QG++PTR   KELS FLGII Q LGRFGCYH
Subjt:  QFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAA
CAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCC
AGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGACGACTAT
GCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACA
AGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGGCCTGACAGCAAAGAGTTGT
CTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAA
CAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCC
AGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGACGACTAT
GCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACA
AGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATCAATTCGCAGCACAGGCTACAACCCTCCAACAAGGCATCGTACCCACGCGGCCTGACAGCAAAGAGTTGT
CTCGTTTTCTAGGGATCATAAGGCAATACCTTGGGCGTTTTGGGTGCTATCATTAG
Protein sequenceShow/hide protein sequence
MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDY
AQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMADQFAAQATTLQQGIVPTRPDSKELSRFLGIIRQYLGRFGCYH