CuGenDBv2

Gene ID	Clc11G11610
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	transcription factor bHLH3
Genome location	ClcChr11:18935364..18935681
RNA-Seq Expression	Clc11G11610
Synteny	Clc11G11610
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010629 - negative regulation of gene expression (biological process) GO:0005634 - nucleus (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR045084 - Transcription factor AIB/MYC-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008461882.1 PREDICTED: transcription factor bHLH3 [Cucumis melo]

6.0e-30

78.02

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Query:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VESIVGSEAC+FLI LAS NILP DSLQFSL  S+VNQGLSQ+L+GSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS GD
Subjt:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

XP_011651443.1 transcription factor bHLH3 [Cucumis sativus]

6.6e-29

79.55

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Query:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VESIVGSEAC+FLI LAS NILP DSLQFSL  S+VNQGLSQ+LDGSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS  D
Subjt:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

XP_022963564.1 transcription factor bHLH3-like isoform X2 [Cucurbita moschata]

4.9e-24

68.18

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Query:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VES++GSEAC+FLI LASSNI+PP++ QF    S+VNQGL+Q+LDGS+WNYA FW VV+LKS  LALIWGD    DSKI I ISGGD
Subjt:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

XP_022963801.1 transcription factor bHLH3-like [Cucurbita moschata]

4.9e-24

68.18

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Query:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VES++GSEAC+FLI LASSNI+PP++ QF    S+VNQGL+Q+LDGS+WNYA FW VV+LKS  LALIWGD    DSKI I ISGGD
Subjt:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

XP_038888141.1 transcription factor bHLH3 [Benincasa hispida]

3.2e-31

79.12

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Query:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VES+VGSEAC+FLI LAS+NILP DSLQFSL  S+VNQGLSQ+LDGSSWNYA FW VVSLKS ALALIWGD N  +SKIEIGISGGD
Subjt:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7H2 Uncharacterized protein

3.2e-29

79.55

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Query:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VESIVGSEAC+FLI LAS NILP DSLQFSL  S+VNQGLSQ+LDGSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS  D
Subjt:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

A0A1S3CG81 transcription factor bHLH3

2.9e-30

78.02

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Query:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VESIVGSEAC+FLI LAS NILP DSLQFSL  S+VNQGLSQ+L+GSSWNYA FW VV+LKS ALALIWGD N  DSKIEIGIS GD
Subjt:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

A0A6J1HH34 transcription factor bHLH3-like

2.4e-24

68.18

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Query:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VES++GSEAC+FLI LASSNI+PP++ QF    S+VNQGL+Q+LDGS+WNYA FW VV+LKS  LALIWGD    DSKI I ISGGD
Subjt:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

A0A6J1HKJ4 transcription factor bHLH3-like isoform X2

2.4e-24

68.18

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Query:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +VES++GSEAC+FLI LASSNI+PP++ QF    S+VNQGL+Q+LDGS+WNYA FW VV+LKS  LALIWGD    DSKI I ISGGD
Subjt:  IVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

A0A6J1K6T2 transcription factor bHLH3-like

2.4e-24

69.23

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Query:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        K+ +VES+VGSEAC+FL+ LASSNIL  D LQ SL   +VNQGL+++LDGSSWNYA FW VVSLKS ALALIWGD N  D KI I I GGD
Subjt:  KKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

SwissProt top hits

e value

%identity

Alignment

A0A3Q7H216 Transcription factor MTB3

1.0e-08

39.08

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Query:  VESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD
        +E ++GSEA +F    AS+++L       S     V Q L +I++GS W YA +W V   KS   ALIWGD + R++KI  G    D
Subjt:  VESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGD

O23487 Transcription factor bHLH3

1.9e-10

40.22

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Query:  KGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH
        + +VES +GSEAC F I  AS++      L      S + QGL  +++GS W+YA FWL  ++ S     LIWGD + R  K   G SG D+
Subjt:  KGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH

Arabidopsis top hits

e value

%identity

Alignment

AT4G16430.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

1.3e-11

40.22

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Query:  KGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH
        + +VES +GSEAC F I  AS++      L      S + QGL  +++GS W+YA FWL  ++ S     LIWGD + R  K   G SG D+
Subjt:  KGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSR-ALALIWGDRNYRDSKIEIGISGGDH

Sequences

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CDS sequence

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ATGAACAAAAAAGGAATAGTGGAATCAATTGTTGGTAGTGAAGCTTGTAAGTTCTTGATTTTGTTGGCATCCAGCAATATCTTACCACCGGATTCCTTGCAATTTTCTCT
TTGCCATTCGACTGTGAATCAGGGGTTAAGCCAAATTTTGGACGGTTCAAGTTGGAATTATGCATTCTTTTGGCTTGTGGTTAGCTTGAAATCTAGGGCTTTAGCTTTGA
TTTGGGGTGATAGGAACTATCGTGATTCAAAGATTGAGATTGGAATTTCTGGTGGGGATCATGTGGATAATTTGGTCAAGACAAATTTTCTTAAATAA

mRNA sequence

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Protein sequence

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MNKKGIVESIVGSEACKFLILLASSNILPPDSLQFSLCHSTVNQGLSQILDGSSWNYAFFWLVVSLKSRALALIWGDRNYRDSKIEIGISGGDHVDNLVKTNFLK

Clc11G11610 (gene) of Watermelon (cordophanus) v2 genome