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Clc11G11785 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G11785
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr11:19566663..19567439
RNA-Seq ExpressionClc11G11785
SyntenyClc11G11785
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032859.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2445.97Show/hide
Query:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSAN-----------------VLTVTEIFDAWVKSHPSAKGLRHKSFPFYD
        RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RMM  +                    ++   E+FD WV+SHP+AKGL +K FP+YD
Subjt:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSAN-----------------VLTVTEIFDAWVKSHPSAKGLRHKSFPFYD

Query:  DLAIAFGKDRATGSCATTTVEVGS
        +L   FG+DRATG  A T  +VGS
Subjt:  DLAIAFGKDRATGSCATTTVEVGS

KAA0035563.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-2542.96Show/hide
Query:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANV------------LTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIA
        RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RM +    +V            +   E+FD WV+SHP+AKGL +KSFP+YD+L   
Subjt:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANV------------LTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIA

Query:  FGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY
        FG DRATG  A T  +VGS       +   + + + DF + Y
Subjt:  FGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2449.17Show/hide
Query:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM----------QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAI
        S +R  KH WT EE+  LVECLV+ V +  WR+DNGTF PG+L  + RMM           M+   ++   E+FD WVKSHP+AKGL +KSF  YD+L+ 
Subjt:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM----------QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAI

Query:  AFGKDRATGSCATTTVEVGS
         FGKDRATG  A +  ++GS
Subjt:  AFGKDRATGSCATTTVEVGS

KAA0054147.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-2550.83Show/hide
Query:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM----------QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAI
        S +R  KH WT EE+  LVECLV+ V    WR+DNGTFRPG+L  + RMM           M+   ++   E+FD WVKSHP+AKGL +KSF  YD+L+ 
Subjt:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM----------QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAI

Query:  AFGKDRATGSCATTTVEVGS
         FGKDRATG  A + V++GS
Subjt:  AFGKDRATGSCATTTVEVGS

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.7e-2540.12Show/hide
Query:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM------------------------------QMRSAN------------VL
        S +RA KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RMM                              +MR  +            ++
Subjt:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM------------------------------QMRSAN------------VL

Query:  TVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI
           ++FD+W+KSHP+AKGL HKSFP+YDDL+  FGKDRATG+ + T   VGS          P+ D  +EDI
Subjt:  TVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.3e-2540.12Show/hide
Query:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM------------------------------QMRSAN------------VL
        S +RA KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RMM                              +MR  +            ++
Subjt:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM------------------------------QMRSAN------------VL

Query:  TVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI
           ++FD+W+KSHP+AKGL HKSFP+YDDL+  FGKDRATG+ + T   VGS          P+ D  +EDI
Subjt:  TVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI

A0A5A7SUL5 Retrotransposon protein6.7e-2545.97Show/hide
Query:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSAN-----------------VLTVTEIFDAWVKSHPSAKGLRHKSFPFYD
        RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RMM  +                    ++   E+FD WV+SHP+AKGL +K FP+YD
Subjt:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSAN-----------------VLTVTEIFDAWVKSHPSAKGLRHKSFPFYD

Query:  DLAIAFGKDRATGSCATTTVEVGS
        +L   FG+DRATG  A T  +VGS
Subjt:  DLAIAFGKDRATGSCATTTVEVGS

A0A5A7SYB2 Retrotransposon protein2.3e-2542.96Show/hide
Query:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANV------------LTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIA
        RA +H+WT EE+  LVECL++ V    W++DNGTFRPG+LA ++RM +    +V            +   E+FD WV+SHP+AKGL +KSFP+YD+L   
Subjt:  RATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANV------------LTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIA

Query:  FGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY
        FG DRATG  A T  +VGS       +   + + + DF + Y
Subjt:  FGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY

A0A5A7U0H7 Retrotransposon protein2.3e-2540.12Show/hide
Query:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM------------------------------QMRSAN------------VL
        S +RA KH WT EE+   VECLV+ V S  WR+DNGTF+PG+LA + RMM                              +MR  +            ++
Subjt:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM------------------------------QMRSAN------------VL

Query:  TVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI
           ++FD+W+KSHP+AKGL HKSFP+YDDL+  FGKDRATG+ + T   VGS          P+ D  +EDI
Subjt:  TVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE---------PVVDEENEDI

A0A5A7UHV9 Retrotransposon protein1.3e-2550.83Show/hide
Query:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM----------QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAI
        S +R  KH WT EE+  LVECLV+ V    WR+DNGTFRPG+L  + RMM           M+   ++   E+FD WVKSHP+AKGL +KSF  YD+L+ 
Subjt:  SRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMM----------QMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAI

Query:  AFGKDRATGSCATTTVEVGS
         FGKDRATG  A + V++GS
Subjt:  AFGKDRATGSCATTTVEVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27260.1 unknown protein2.4e-0622.67Show/hide
Query:  RARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTF-----RPGFLANI----------------LRMMQMRSANVLTV-------------------T
        R +   + W+ EE ++LV+ LV+ + + +WR  NGT         F+  I                ++ ++++  + L +                    
Subjt:  RARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTF-----RPGFLANI----------------LRMMQMRSANVLTV-------------------T

Query:  EIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY
        E++  ++K+HP+ K LR+ +F F+D+L I FG+  ATG  A    +  ++ +     E+       DF+N Y
Subjt:  EIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACCGATGAGGAGGACCGAATCCTCGTAGAGTGTTTGGTCCAATGTGTTCAGTCCAGGCACTGGCG
AGCTGATAACGGGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAAATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCA
AGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACT
GTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCT
CCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGT
GGTTCGGGAGGGATTCCAACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATCCGGATCACGCGCAAGAGCCACAAAACATATTTGGACCGATGAGGAGGACCGAATCCTCGTAGAGTGTTTGGTCCAATGTGTTCAGTCCAGGCACTGGCG
AGCTGATAACGGGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAAATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCA
AGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACT
GTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCT
CCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGT
GGTTCGGGAGGGATTCCAACTTTTGA
Protein sequenceShow/hide protein sequence
MEASGSRARATKHIWTDEEDRILVECLVQCVQSRHWRADNGTFRPGFLANILRMMQMRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTT
VEVGSEPVVDEENEDILNNQSPDFENFYIPIHLLSTLPHQRTLQLPPTIEDLQVACHQEVGGPEVPRLESTATWFGRDSNF