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Clc11G12120 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G12120
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr11:20576966..20577310
RNA-Seq ExpressionClc11G12120
SyntenyClc11G12120
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033552.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.3e-1086.84Show/hide
Query:  EKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVL
        +K++CLGALDGTYIKVNVSA DRPRYRTRKGE+ATNVL
Subjt:  EKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVL

KAA0053155.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-0952.94Show/hide
Query:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRD
        ++CLGALDG YIKVN+ A DRP ++TRKG+IATNVL CV +   S       K  Q  QGF  M F +
Subjt:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRD

KAA0056137.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.2e-1156.34Show/hide
Query:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD
        Q+ LGALDGTYIKVNVS  DR RY+TRKGE+ATNVL+         SF + GK LQ I+ F  M+    TD
Subjt:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD

KAA0062210.1 retrotransposon protein [Cucumis melo var. makuwa]8.4e-1151.85Show/hide
Query:  RWKVEVVSEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD
        RWK       Q+CL ALDGTYIKVNV A DRP++RTRKG+IATNVL CV +   S      GK  Q  +G   M F +  D
Subjt:  RWKVEVVSEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD

XP_038896406.1 uncharacterized protein LOC120084669 [Benincasa hispida]9.3e-1056.52Show/hide
Query:  SEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQF
        ++ +  LGALD TYIKVNVSA DRP YRTRKGEIA NVL              GGKGLQPI   LG  +
Subjt:  SEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQF

TrEMBL top hitse value%identityAlignment
A0A5A7SQT6 Putative nuclease HARBI14.5e-1086.84Show/hide
Query:  EKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVL
        +K++CLGALDGTYIKVNVSA DRPRYRTRKGE+ATNVL
Subjt:  EKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVL

A0A5A7UHK3 Retrotransposon protein1.0e-0952.94Show/hide
Query:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRD
        ++CLGALDG YIKVN+ A DRP ++TRKG+IATNVL CV +   S       K  Q  QGF  M F +
Subjt:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRD

A0A5A7V4J1 Retrotransposon protein4.1e-1151.85Show/hide
Query:  RWKVEVVSEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD
        RWK       Q+CL ALDGTYIKVNV A DRP++RTRKG+IATNVL CV +   S      GK  Q  +G   M F +  D
Subjt:  RWKVEVVSEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD

A0A5D3CQK7 Putative nuclease HARBI11.1e-1156.34Show/hide
Query:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD
        Q+ LGALDGTYIKVNVS  DR RY+TRKGE+ATNVL+         SF + GK LQ I+ F  M+    TD
Subjt:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD

A0A5D3DKU8 Retrotransposon protein1.3e-0952.94Show/hide
Query:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRD
        ++CLG LDG YIKVN+ A DRP +RTRKG+IATNVL CV +   S       K  Q  QGF  M F +
Subjt:  QDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCGATGGAAGGTGGAAGTGGTTTCAGAGAAACAGGATTGTCTAGGTGCGTTAGACGGCACATATATTAAAGTGAATGTTAGTGCCGAAGATCGACCTCGATATAG
GACGAGGAAGGGAGAAATCGCCACAAATGTCTTGCAGTGTGTGATCAAAATGGAGAGTTCATCTTCGTTTTGCCGGGGTGGGAAGGGTCTGCAGCCAATTCAAGGGTTCT
TAGGGATGCAGTTTCGCGACCATACAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACCGATGGAAGGTGGAAGTGGTTTCAGAGAAACAGGATTGTCTAGGTGCGTTAGACGGCACATATATTAAAGTGAATGTTAGTGCCGAAGATCGACCTCGATATAG
GACGAGGAAGGGAGAAATCGCCACAAATGTCTTGCAGTGTGTGATCAAAATGGAGAGTTCATCTTCGTTTTGCCGGGGTGGGAAGGGTCTGCAGCCAATTCAAGGGTTCT
TAGGGATGCAGTTTCGCGACCATACAGATTGA
Protein sequenceShow/hide protein sequence
MYRWKVEVVSEKQDCLGALDGTYIKVNVSAEDRPRYRTRKGEIATNVLQCVIKMESSSSFCRGGKGLQPIQGFLGMQFRDHTD