CuGenDBv2

Gene ID	Clc11G12650
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Mitochondrial import inner membrane translocase subunit Tim21
Genome location	ClcChr11:21675328..21676604
RNA-Seq Expression	Clc11G12650
Synteny	Clc11G12650
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0030150 - protein import into mitochondrial matrix (biological process) GO:0005744 - TIM23 mitochondrial import inner membrane translocase complex (cellular component) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR013261 - Mitochondrial import inner membrane translocase subunit Tim21

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6578835.1 putative mitochondrial import inner membrane translocase subunit TIM21, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

XP_004140920.1 probable mitochondrial import inner membrane translocase subunit TIM21 isoform X1 [Cucumis sativus]

2.1e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

XP_022133805.1 probable mitochondrial import inner membrane translocase subunit TIM21 [Momordica charantia]

2.1e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

XP_022939740.1 probable mitochondrial import inner membrane translocase subunit TIM21 isoform X2 [Cucurbita moschata]

2.1e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

XP_038884080.1 probable mitochondrial import inner membrane translocase subunit TIM21 [Benincasa hispida]

2.1e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SNX6 Mitochondrial import inner membrane translocase subunit Tim21

1.0e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

A0A6J1JQI4 Mitochondrial import inner membrane translocase subunit Tim21

1.0e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

A0A6J1JU64 Mitochondrial import inner membrane translocase subunit Tim21

1.0e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

A0A6J1JY54 Mitochondrial import inner membrane translocase subunit Tim21

1.0e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

A0A6J1JZW2 Mitochondrial import inner membrane translocase subunit Tim21

1.0e-10

94.74

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+AAA GYAVFKELIFQPKEYKIFDKALKRIQDDSQ
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

SwissProt top hits

e value

%identity

Alignment

Q1G3L1 Probable mitochondrial import inner membrane translocase subunit TIM21

8.9e-12

84.21

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+A A GY VFKELIFQPKEYK+FDKALKRIQDD Q
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G00026.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

6.3e-13

84.21

Show/hide

Query:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ
        GLG+A A GY VFKELIFQPKEYK+FDKALKRIQDD Q
Subjt:  GLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGAGTGTTACCTTCAGGATCTGCGGATGGACGGACGGCCACCTAGGGCTTGGAATTGCAGCTGCTACTGGATATGCAGTTTTTAAGGAGCTTATATTTCAACCAAA
AGAGTATAAGATCTTTGACAAGGCTCTTAAAAGGATTCAAGACGACAGTCAGTCTAATTTTCATGCTTACATTTCTATGGCTCATTTTTTAAGCAGATTTCTCAGTCCTA
AGAGAAATGAGGAGAAGAAAAATGAACTAGAGACCCTAGGAACGGTGACTGCGAGCTCTCCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSVTFRICGWTDGHLGLGIAAATGYAVFKELIFQPKEYKIFDKALKRIQDDSQSNFHAYISMAHFLSRFLSPKRNEEKKNELETLGTVTASSP

Clc11G12650 (gene) of Watermelon (cordophanus) v2 genome