; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G12730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G12730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationClcChr11:21915327..21917121
RNA-Seq ExpressionClc11G12730
SyntenyClc11G12730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062468.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]1.1e-4345.37Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR
        TK  +RKIP N+P   IDG+ FH+EE+ HKWKYVV+  I +E  +SDQ   C  I+EL+  A L  T+  +G FYP+LICELIVN P+ FNDPS +   +
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR

Query:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI
                    +  IGI+NW   T+ S +   L   +Y +G R   N G  +FNHLLRHV++FAI + I F R+LSG ++AQ  ++L L +  GP   +
Subjt:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI

Query:  LNLSYNLFQGSHVPDI
        + LS  LFQGSH+PD+
Subjt:  LNLSYNLFQGSHVPDI

TYK27414.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]1.1e-4345.37Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR
        TK  +RKIP N+P   IDG+ FH+EE+ HKWKYVV+  I +E  +SDQ   C  I+EL+  A L  T+  +G FYP+LICELIVN P+ FNDPS +   +
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR

Query:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI
                    +  IGI+NW   T+ S +   L   +Y +G R   N G  +FNHLLRHV++FAI + I F R+LSG ++AQ  ++L L +  GP   +
Subjt:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI

Query:  LNLSYNLFQGSHVPDI
        + LS  LFQGSH+PD+
Subjt:  LNLSYNLFQGSHVPDI

XP_008456227.1 PREDICTED: uncharacterized protein LOC103496232 [Cucumis melo]1.7e-4441.7Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----
        TK  R+K+PPNIP VPIDGILFH+EENV  WK+VVQ  + +E  +SD+  SC+ IM+L+  A L +T++N+G FYPQLI E I+N P +F+DPSN     
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----

Query:  ---------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFL
                                               + +IGIANW PS+H S V   L + LYQI   +  +   F++N  LRHV SF +K+SI   
Subjt:  ---------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFL

Query:  RLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNI
        R  S +L+    +VL  ++   P+   L+LSY LFQGSHVPDI H++
Subjt:  RLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNI

XP_038904247.1 uncharacterized protein LOC120090596 [Benincasa hispida]1.0e-6547.08Show/hide
Query:  SSRLKAKGSGPSDHSSPYRSSSFDFEHIYL--SSSKDDIAVVSAHHRTKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCL
        SS     GS  S  S      S     + L  SSS+DD+A+V  +  T+  RRKIPPN+P V ID I FH+E+NV +WK+VVQ CI +EK  SDQ  SCL
Subjt:  SSRLKAKGSGPSDHSSPYRSSSFDFEHIYL--SSSKDDIAVVSAHHRTKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCL

Query:  EIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR------------------------------------FIFEI--GIANWCPSTH
        +IM+L+ H  L++TV+NL  FYPQL+ ELIVN P++F+DP+N   ++                                    FI E+  GIANWCPSTH
Subjt:  EIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR------------------------------------FIFEI--GIANWCPSTH

Query:  GSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAKAI
        GS + P LASLLYQIG  STFNF VFV+N L RH DSFAIKL I   R+  G+L++QCP +LG N+   P   +LNL Y +F+G++  D VHNI P KA 
Subjt:  GSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAKAI

Query:  DISLPENL
        +I L E+L
Subjt:  DISLPENL

XP_038904484.1 uncharacterized protein LOC120090854 [Benincasa hispida]8.9e-4641.24Show/hide
Query:  RSSSFDFE---HIYLSSSKDDIAVVSAHHRTKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVIN
        +S  FDF+    IY+ S+++DIA +    R +  R KI PN+P + IDGI FH+E+NV +WKYV+Q  I NE V+S+Q  SCL+IM+L+    L++T+++
Subjt:  RSSSFDFE---HIYLSSSKDDIAVVSAHHRTKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVIN

Query:  LGSFYPQLICELIVNFPTQFNDPSNQTSRRF--------IFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFL
        L +FY QL+ E I+  P++FNDP       F           + +     S   S V     SLLYQIGT STF+F                        
Subjt:  LGSFYPQLICELIVNFPTQFNDPSNQTSRRF--------IFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFL

Query:  RLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAKAIDISLPENLQVPKGGLHSPTEL
                 + P++LG N+   P    LNLSY +FQG+ VPDIVHNI P K+ DI LPE+LQVPKGGL  PTEL
Subjt:  RLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAKAIDISLPENLQVPKGGLHSPTEL

TrEMBL top hitse value%identityAlignment
A0A1S3C405 uncharacterized protein LOC1034962328.1e-4541.7Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----
        TK  R+K+PPNIP VPIDGILFH+EENV  WK+VVQ  + +E  +SD+  SC+ IM+L+  A L +T++N+G FYPQLI E I+N P +F+DPSN     
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----

Query:  ---------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFL
                                               + +IGIANW PS+H S V   L + LYQI   +  +   F++N  LRHV SF +K+SI   
Subjt:  ---------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFL

Query:  RLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNI
        R  S +L+    +VL  ++   P+   L+LSY LFQGSHVPDI H++
Subjt:  RLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNI

A0A5A7TK74 Uncharacterized protein1.2e-4337.18Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----
        TK  R+KIP N+P VPIDGI FH+EE+V +WK+V+Q  I +   +SD+  SC+ IM+L++ A L +T+ N+G FYPQLI E IVN P +FNDPS+     
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----

Query:  -----------------------------------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTF
                                                                         + +I IANW PS+H S +   L + LYQI      
Subjt:  -----------------------------------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTF

Query:  NFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAK
        N G F++N LLRHV SF +K+ I FLRL S +L+    +VL + +  GP+   + LS+ LFQGSHVPDI H++ P +
Subjt:  NFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAK

A0A5A7V4G0 Flocculation protein FLO11-like5.3e-4445.37Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR
        TK  +RKIP N+P   IDG+ FH+EE+ HKWKYVV+  I +E  +SDQ   C  I+EL+  A L  T+  +G FYP+LICELIVN P+ FNDPS +   +
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR

Query:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI
                    +  IGI+NW   T+ S +   L   +Y +G R   N G  +FNHLLRHV++FAI + I F R+LSG ++AQ  ++L L +  GP   +
Subjt:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI

Query:  LNLSYNLFQGSHVPDI
        + LS  LFQGSH+PD+
Subjt:  LNLSYNLFQGSHVPDI

A0A5D3DTI5 Uncharacterized protein1.2e-4337.18Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----
        TK  R+KIP N+P VPIDGI FH+EE+V +WK+V+Q  I +   +SD+  SC+ IM+L++ A L +T+ N+G FYPQLI E IVN P +FNDPS+     
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSN-----

Query:  -----------------------------------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTF
                                                                         + +I IANW PS+H S +   L + LYQI      
Subjt:  -----------------------------------------------------------QTSRRFIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTF

Query:  NFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAK
        N G F++N LLRHV SF +K+ I FLRL S +L+    +VL + +  GP+   + LS+ LFQGSHVPDI H++ P +
Subjt:  NFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAK

A0A5D3DV74 Flocculation protein FLO11-like5.3e-4445.37Show/hide
Query:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR
        TK  +RKIP N+P   IDG+ FH+EE+ HKWKYVV+  I +E  +SDQ   C  I+EL+  A L  T+  +G FYP+LICELIVN P+ FNDPS +   +
Subjt:  TKGKRRKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRR

Query:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI
                    +  IGI+NW   T+ S +   L   +Y +G R   N G  +FNHLLRHV++FAI + I F R+LSG ++AQ  ++L L +  GP   +
Subjt:  -----------FIFEIGIANWCPSTHGSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSI

Query:  LNLSYNLFQGSHVPDI
        + LS  LFQGSH+PD+
Subjt:  LNLSYNLFQGSHVPDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGATCCGTCGTCTTCCTCCTCTAAGCAGCCAAGAATGGCTACTCGAACGTCTGATAGAGTGGTTAGTGAGAACCATCCGATTGATACTTCAGCTAGTGAGAGCCC
GCTGCATGGCTTTGATCCTATTAAGGTAATGCCTCTTGCTATGGTTCCTTTGGTTGATCCCTCTACTCAAATCTCCTGTCCTATTGTGCCTACTGTTGATAGAAATCCCC
TCGTAGATGAAACCTTGTTTGTAAGACTAGACAATCGTGAGTTTGAGTATGTATTTAGTGTTGATCACTGTGTTCGTAATGTTACTGTTGGCTCTGTTCCTGTTTCTAAG
TCTACCTCTCTAATTGATGAGAATATGTTTGATAAGTCTGAAATTGTTGGTTCTACTATTGGAATGGTTGTTAATATAAGCCCTGTTGTTGTGCTATGGTCGCTAATACA
AATCTTGTGCTACCGGATAGTCCTCTTAATTCTGATGTTCCTCAAAGGGTTGTCTCTGATACTGAGGCAGTCGTCTCGTCTCAAAGCTAAAGGCAGTGGTCCTTCCGATC
ATTCTAGCCCTTATCGTTCAAGTTCCTTCGATTTTGAGCATATTTACTTGTCTAGCTCTAAAGATGATATTGCAGTTGTCTCTGCCCATCATCGTACCAAGGGAAAGCGT
AGAAAGATTCCCCCAAATATTCCATTTGTTCCCATTGATGGAATTTTATTTCATAATGAAGAGAATGTTCACAAGTGGAAATATGTTGTGCAACACTGCATCACCAATGA
AAAGGTTATGTCTGATCAAGCTGTTTCTTGTCTGGAAATCATGGAGTTAGTTTATCATGCCAGTCTTATGAGAACTGTGATCAATTTGGGTTCTTTCTATCCTCAACTCA
TATGTGAGTTGATTGTGAACTTTCCTACTCAGTTTAACGATCCTAGCAACCAGACTTCCAGAAGGTTCATATTCGAGATTGGCATTGCAAATTGGTGTCCCTCAACTCAT
GGGTCTGGCGTGTTTCCTATTTTGGCTAGCTTACTGTATCAAATTGGTACTCGCTCTACCTTCAATTTTGGTGTGTTTGTGTTTAATCACTTACTGCGACATGTGGATTC
CTTTGCCATCAAGCTTTCTATCTGCTTCCTTCGTTTACTGTCTGGCATTTTGATTGCTCAATGTCCCTCTGTTCTTGGCCTCAATGAAGGTTCTGGTCCTGATCTTTCAA
TTCTTAATCTCAGCTACAATTTGTTTCAAGGATCTCATGTGCCCGACATTGTGCACAACATTCGTCCCGCGAAGGCTATTGATATTTCCTTGCCAGAAAATCTTCAGGTC
CCAAAAGGCGGGTTACATAGTCCTACTGAACTTGGCATGCATGTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGATCCGTCGTCTTCCTCCTCTAAGCAGCCAAGAATGGCTACTCGAACGTCTGATAGAGTGGTTAGTGAGAACCATCCGATTGATACTTCAGCTAGTGAGAGCCC
GCTGCATGGCTTTGATCCTATTAAGGTAATGCCTCTTGCTATGGTTCCTTTGGTTGATCCCTCTACTCAAATCTCCTGTCCTATTGTGCCTACTGTTGATAGAAATCCCC
TCGTAGATGAAACCTTGTTTGTAAGACTAGACAATCGTGAGTTTGAGTATGTATTTAGTGTTGATCACTGTGTTCGTAATGTTACTGTTGGCTCTGTTCCTGTTTCTAAG
TCTACCTCTCTAATTGATGAGAATATGTTTGATAAGTCTGAAATTGTTGGTTCTACTATTGGAATGGTTGTTAATATAAGCCCTGTTGTTGTGCTATGGTCGCTAATACA
AATCTTGTGCTACCGGATAGTCCTCTTAATTCTGATGTTCCTCAAAGGGTTGTCTCTGATACTGAGGCAGTCGTCTCGTCTCAAAGCTAAAGGCAGTGGTCCTTCCGATC
ATTCTAGCCCTTATCGTTCAAGTTCCTTCGATTTTGAGCATATTTACTTGTCTAGCTCTAAAGATGATATTGCAGTTGTCTCTGCCCATCATCGTACCAAGGGAAAGCGT
AGAAAGATTCCCCCAAATATTCCATTTGTTCCCATTGATGGAATTTTATTTCATAATGAAGAGAATGTTCACAAGTGGAAATATGTTGTGCAACACTGCATCACCAATGA
AAAGGTTATGTCTGATCAAGCTGTTTCTTGTCTGGAAATCATGGAGTTAGTTTATCATGCCAGTCTTATGAGAACTGTGATCAATTTGGGTTCTTTCTATCCTCAACTCA
TATGTGAGTTGATTGTGAACTTTCCTACTCAGTTTAACGATCCTAGCAACCAGACTTCCAGAAGGTTCATATTCGAGATTGGCATTGCAAATTGGTGTCCCTCAACTCAT
GGGTCTGGCGTGTTTCCTATTTTGGCTAGCTTACTGTATCAAATTGGTACTCGCTCTACCTTCAATTTTGGTGTGTTTGTGTTTAATCACTTACTGCGACATGTGGATTC
CTTTGCCATCAAGCTTTCTATCTGCTTCCTTCGTTTACTGTCTGGCATTTTGATTGCTCAATGTCCCTCTGTTCTTGGCCTCAATGAAGGTTCTGGTCCTGATCTTTCAA
TTCTTAATCTCAGCTACAATTTGTTTCAAGGATCTCATGTGCCCGACATTGTGCACAACATTCGTCCCGCGAAGGCTATTGATATTTCCTTGCCAGAAAATCTTCAGGTC
CCAAAAGGCGGGTTACATAGTCCTACTGAACTTGGCATGCATGTTCTTTGA
Protein sequenceShow/hide protein sequence
MHDPSSSSSKQPRMATRTSDRVVSENHPIDTSASESPLHGFDPIKVMPLAMVPLVDPSTQISCPIVPTVDRNPLVDETLFVRLDNREFEYVFSVDHCVRNVTVGSVPVSK
STSLIDENMFDKSEIVGSTIGMVVNISPVVVLWSLIQILCYRIVLLILMFLKGLSLILRQSSRLKAKGSGPSDHSSPYRSSSFDFEHIYLSSSKDDIAVVSAHHRTKGKR
RKIPPNIPFVPIDGILFHNEENVHKWKYVVQHCITNEKVMSDQAVSCLEIMELVYHASLMRTVINLGSFYPQLICELIVNFPTQFNDPSNQTSRRFIFEIGIANWCPSTH
GSGVFPILASLLYQIGTRSTFNFGVFVFNHLLRHVDSFAIKLSICFLRLLSGILIAQCPSVLGLNEGSGPDLSILNLSYNLFQGSHVPDIVHNIRPAKAIDISLPENLQV
PKGGLHSPTELGMHVL