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Clc11G13330 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G13330
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAuxin-responsive protein
Genome locationClcChr11:23748254..23751120
RNA-Seq ExpressionClc11G13330
SyntenyClc11G13330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586078.1 Auxin-responsive protein IAA33, partial [Cucurbita argyrosperma subsp. sororia]4.5e-6181.25Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLA--------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SGGGE
        TQSPAAAAAAAAEYFKMRRWPE +L         +   E E EEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD      GGGE
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLA--------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SGGGE

Query:  NSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
         SG+R+LDL NAVPGH+VAYEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGRGN
Subjt:  NSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

XP_022938283.1 auxin-responsive protein IAA33 [Cucurbita moschata]1.3e-5777.91Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLA-----------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SG
        TQSP    AAAAEYFKMRRWPE +L            E E E E EEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD      G
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLA-----------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SG

Query:  GGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        GGE S +R+LDL NAVPGH+VAYEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGRGN
Subjt:  GGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

XP_022969694.1 auxin-responsive protein IAA33 [Cucurbita maxima]4.6e-5879.75Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLA------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SGGGENS
        TQSP  AAAAAAEYFKMRRWPE +L       + + + E EEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD      GGGE S
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLA------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SGGGENS

Query:  GERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        G+R+LDL NAVPGH+VAYEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRR RGN
Subjt:  GERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

XP_023538318.1 auxin-responsive protein IAA33 [Cucurbita pepo subsp. pepo]2.4e-6285.06Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLA-------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERR
        TQSP AAAAAAAEYFKMRRWPE +L        + E E E EEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD GGGE SGER+
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLA-------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERR

Query:  LDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        LDL NAVPGH+VAYEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGRGN
Subjt:  LDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

XP_038890972.1 auxin-responsive protein IAA33 [Benincasa hispida]5.1e-6588.31Show/hide
Query:  RSRTTQSPAAAAAAAAEYFKMRRWPERRLA-EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD--SGGGENSGERR
        +SRTTQSP  AAAAAAE FKMRRWPERR+    + EGEGEEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDD+D   GGGENSGER+
Subjt:  RSRTTQSPAAAAAAAAEYFKMRRWPERRLA-EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD--SGGGENSGERR

Query:  LDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        LDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRI+PVKANSRRGRGN
Subjt:  LDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

TrEMBL top hitse value%identityAlignment
A0A0A0LH98 Auxin-responsive protein3.2e-5783.67Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV
        TQSP  AAAAAAEYFKM RW +RR++  +   + EEDFAAVIP VTVVLEGRAICQRISLHKH SYESLAKALRRMFVDDDD+  GE+SGER LDLTNAV
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV

Query:  PGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        PG+IVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGR N
Subjt:  PGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

A0A1S3BRI6 Auxin-responsive protein1.1e-5784.35Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV
        TQSP  AAAAAAEYFKM RW ERR+   +   + EEDF+AVIP VTVVLEGRAICQRISLHKH SYESLAKALRRMFVDDDD   GE SGERRLDLTNAV
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV

Query:  PGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        PG+IVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGR N
Subjt:  PGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

A0A6J1DKE3 Auxin-responsive protein5.7e-5482.61Show/hide
Query:  AAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGEN-SGERRLDLTNAVPGHIVAYE
        AAAEY K RRWPERR          EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV +DD GGG++ SGERRLDL+NAVPGH+VAYE
Subjt:  AAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGEN-SGERRLDLTNAVPGHIVAYE

Query:  DIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRG
        DIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRG
Subjt:  DIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRG

A0A6J1FIF6 Auxin-responsive protein6.5e-5877.91Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLA-----------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SG
        TQSP    AAAAEYFKMRRWPE +L            E E E E EEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD      G
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLA-----------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SG

Query:  GGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        GGE S +R+LDL NAVPGH+VAYEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRRGRGN
Subjt:  GGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

A0A6J1I3D9 Auxin-responsive protein2.2e-5879.75Show/hide
Query:  TQSPAAAAAAAAEYFKMRRWPERRLA------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SGGGENS
        TQSP  AAAAAAEYFKMRRWPE +L       + + + E EEDFAAVIP VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD      GGGE S
Subjt:  TQSPAAAAAAAAEYFKMRRWPERRLA------EGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDD-----SGGGENS

Query:  GERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN
        G+R+LDL NAVPGH+VAYEDIENDLLLAGDLNWNDFVRVAKRIRILP+KANSRR RGN
Subjt:  GERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN

SwissProt top hitse value%identityAlignment
A2WTQ5 Auxin-responsive protein IAA51.3e-0727.46Show/hide
Query:  SPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAV--IPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV
        +P AA A    +  +R + +  LA    +G+GE+   A      V V ++G    +++ L  ++SYE L+ AL +MF        G      R  LTN  
Subjt:  SPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAV--IPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV

Query:  PG-------HIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
                 +++ YED + D +L GDL W+ F  + ++++I+
Subjt:  PG-------HIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

P0C128 Auxin-responsive protein IAA251.3e-0732.46Show/hide
Query:  RLAEGEGEGE---GEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDL
        +L   EG G     +E  ++    V V LEG A+ ++I L  H SY+SL++AL+ MF      G      E +     +   +++ YED E D +L GD+
Subjt:  RLAEGEGEGE---GEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDL

Query:  NWNDFVRVAKRIRI
         W  F+   KR+ I
Subjt:  NWNDFVRVAKRIRI

Q0JKG7 Auxin-responsive protein IAA51.3e-0727.46Show/hide
Query:  SPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAV--IPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV
        +P AA A    +  +R + +  LA    +G+GE+   A      V V ++G    +++ L  ++SYE L+ AL +MF        G      R  LTN  
Subjt:  SPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAV--IPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAV

Query:  PG-------HIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
                 +++ YED + D +L GDL W+ F  + ++++I+
Subjt:  PG-------HIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

Q6K846 Auxin-responsive protein IAA93.7e-1039.56Show/hide
Query:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
        V V  EG AI +++ L  H+SY+ LA  L RMF  +D  G  + + +   D      G +V YED + D +L GD+ W+DF R  KR++IL
Subjt:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

Q9FKM7 Auxin-responsive protein IAA335.7e-3562.1Show/hide
Query:  RLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWN
        R  +G G    ++  ++V+P VTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD  DS          LDL+NA+PGH++AYED+ENDLLLAGDL W 
Subjt:  RLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWN

Query:  DFVRVAKRIRILPVKANSRRGRGN
        DFVRVAKRIRILPVK N+R+ + N
Subjt:  DFVRVAKRIRILPVKANSRRGRGN

Arabidopsis top hitse value%identityAlignment
AT1G04550.2 AUX/IAA transcriptional regulator family protein3.6e-0832.97Show/hide
Query:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
        V V ++G  I +++ +  H+SYE+LA+ L  MF     +G       + L L +     ++ YED E D +L GD+ W  F+   KR+RI+
Subjt:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

AT2G33310.1 auxin-induced protein 135.5e-0933.7Show/hide
Query:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSG-ERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
        + V ++G AI +++ L+ H+SYE+LA+ L  MF   +    G  S   + L L +     ++ YED E D +L GD+ W  F+   KR+R++
Subjt:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSG-ERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

AT2G33310.2 auxin-induced protein 135.5e-0933.7Show/hide
Query:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSG-ERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
        + V ++G AI +++ L+ H+SYE+LA+ L  MF   +    G  S   + L L +     ++ YED E D +L GD+ W  F+   KR+R++
Subjt:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSG-ERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

AT2G33310.3 auxin-induced protein 135.5e-0933.7Show/hide
Query:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSG-ERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL
        + V ++G AI +++ L+ H+SYE+LA+ L  MF   +    G  S   + L L +     ++ YED E D +L GD+ W  F+   KR+R++
Subjt:  VTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSG-ERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRIL

AT5G57420.1 indole-3-acetic acid inducible 334.1e-3662.1Show/hide
Query:  RLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWN
        R  +G G    ++  ++V+P VTVVLEGR+ICQRISL KH SY+SLA ALR+MFVD  DS          LDL+NA+PGH++AYED+ENDLLLAGDL W 
Subjt:  RLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLTNAVPGHIVAYEDIENDLLLAGDLNWN

Query:  DFVRVAKRIRILPVKANSRRGRGN
        DFVRVAKRIRILPVK N+R+ + N
Subjt:  DFVRVAKRIRILPVKANSRRGRGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAATTTAAAAAAGGCATTGGGTCGGTCTCGAACAACACAATCCCCTGCTGCTGCTGCCGCCGCCGCTGCAGAGTATTTCAAGATGAGGCGGTGGCCGGAGAGGAG
ACTGGCGGAGGGGGAGGGGGAGGGGGAGGGGGAGGAGGATTTTGCGGCGGTGATTCCGCAGGTGACTGTGGTGCTGGAAGGGAGGGCGATCTGTCAGCGGATCAGCCTCC
ACAAACATGCAAGCTATGAGAGCCTAGCGAAGGCTCTCAGAAGGATGTTTGTCGACGATGACGACAGCGGCGGTGGTGAAAACTCCGGCGAGCGGCGGCTGGACTTGACG
AACGCGGTTCCGGGTCATATTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCTGGTGATCTCAATTGGAATGATTTTGTGCGGGTGGCGAAGAGAATTCGAAT
ACTGCCAGTAAAAGCAAATTCAAGGAGGGGAAGAGGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTAATTTAAAAAAGGCATTGGGTCGGTCTCGAACAACACAATCCCCTGCTGCTGCTGCCGCCGCCGCTGCAGAGTATTTCAAGATGAGGCGGTGGCCGGAGAGGAG
ACTGGCGGAGGGGGAGGGGGAGGGGGAGGGGGAGGAGGATTTTGCGGCGGTGATTCCGCAGGTGACTGTGGTGCTGGAAGGGAGGGCGATCTGTCAGCGGATCAGCCTCC
ACAAACATGCAAGCTATGAGAGCCTAGCGAAGGCTCTCAGAAGGATGTTTGTCGACGATGACGACAGCGGCGGTGGTGAAAACTCCGGCGAGCGGCGGCTGGACTTGACG
AACGCGGTTCCGGGTCATATTGTTGCTTATGAAGATATTGAAAATGATCTTCTTCTTGCTGGTGATCTCAATTGGAATGATTTTGTGCGGGTGGCGAAGAGAATTCGAAT
ACTGCCAGTAAAAGCAAATTCAAGGAGGGGAAGAGGAAATTAA
Protein sequenceShow/hide protein sequence
MCNLKKALGRSRTTQSPAAAAAAAAEYFKMRRWPERRLAEGEGEGEGEEDFAAVIPQVTVVLEGRAICQRISLHKHASYESLAKALRRMFVDDDDSGGGENSGERRLDLT
NAVPGHIVAYEDIENDLLLAGDLNWNDFVRVAKRIRILPVKANSRRGRGN