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Clc11G13440 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G13440
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr11:23998125..23999529
RNA-Seq ExpressionClc11G13440
SyntenyClc11G13440
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0046654 - tetrahydrofolate biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004146 - dihydrofolate reductase activity (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP63307.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]1.6e-0966.67Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M+ +PY++ +GS MYAM+ CRPDL Y+MS IS+FM+NPGKPHWEA
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
RVW64151.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.8e-0862.22Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        MKS+PY++++GS MYAM+  RPDL +++S +S+FMSNPGK HWEA
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
RVW64195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.8e-0862.22Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        MKS+PY++++GS MYAM+  RPDL +++S +S+FMSNPGK HWEA
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
XP_038972174.1 secreted RxLR effector protein 161-like [Phoenix dactylifera]8.0e-0962.5Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEAANG
        MKSIPYA+ +GS MYAM+ CRPDL +++S +S+FM+NPGK HW A  G
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEAANG
XP_041011256.1 secreted RxLR effector protein 161-like [Juglans microcarpa x Juglans regia]1.8e-0864.44Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M+ IPYAN++GS MYAM+  RPDL Y++S +S+FMSNPGK HW+A
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
TrEMBL top hitse value%identityAlignment
A0A151T8E0 Retrovirus-related Pol polyprotein from transposon TNT 1-947.8e-1066.67Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M+ +PY++ +GS MYAM+ CRPDL Y+MS IS+FM+NPGKPHWEA
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
A0A438FWA4 Retrovirus-related Pol polyprotein from transposon TNT 1-948.6e-0962.22Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        MKS+PY++++GS MYAM+  RPDL +++S +S+FMSNPGK HWEA
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class8.6e-0968.89Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M +IPY N +GS MY MI  RPDLGY+MS IS+FMSNPGK HW+A
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
A0A5A7UB25 Putative gag-pol polyprotein8.6e-0968.89Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M +IPY N +GS MY MI  RPDLGY+MS IS+FMSNPGK HW+A
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
A0A5D3CTV2 Putative polyprotein8.6e-0968.89Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M +IPY N +GS MY MI  RPDLGY+MS IS+FMSNPGK HW+A
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1619.5e-0542.22Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        MK++PY + +G+ MY M+  RPDL  ++  +S+F S+P   HW+A
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-0848.89Show/hide
Query:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
        M  +PY++ +GS MYAM+  RPD+ +++  +S+F+ NPGK HWEA
Subjt:  MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEA
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCATCCCTTATGCTAATCTTATGGGCAGTTCGATGTATGCTATGATTTCTTGTCGTCCTGATTTAGGCTATTCCATGAGTACTATTTCCAAATTTATGAGTAA
TCCTGGAAAACCTCATTGGGAGGCAGCAAATGGGAGACACTTACCTCTGGTGTTTCCGAAGGAACACAAACCTCTGGTGATCCGAAGGAACACAAAGACCTCTGGTGATC
CCGAAGGAACGCAAATCTTTAATGATCCCGAAGGAACACACATCCTCTGGTGGACACACAACCAACGTAGAAGGTCCCGACCTAACCAAATCTTGAAATCCCGGCGTAAC
CCACGAAGAATGGATGATGCCGATGAAGCTGAACGGAGAGAGTGCAGCTGGGCGGCGGTTTGCAAATGGCGGACCAAAACCCACCGAAATCCAAGATTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCCATCCCTTATGCTAATCTTATGGGCAGTTCGATGTATGCTATGATTTCTTGTCGTCCTGATTTAGGCTATTCCATGAGTACTATTTCCAAATTTATGAGTAA
TCCTGGAAAACCTCATTGGGAGGCAGCAAATGGGAGACACTTACCTCTGGTGTTTCCGAAGGAACACAAACCTCTGGTGATCCGAAGGAACACAAAGACCTCTGGTGATC
CCGAAGGAACGCAAATCTTTAATGATCCCGAAGGAACACACATCCTCTGGTGGACACACAACCAACGTAGAAGGTCCCGACCTAACCAAATCTTGAAATCCCGGCGTAAC
CCACGAAGAATGGATGATGCCGATGAAGCTGAACGGAGAGAGTGCAGCTGGGCGGCGGTTTGCAAATGGCGGACCAAAACCCACCGAAATCCAAGATTGACTTAA
Protein sequenceShow/hide protein sequence
MKSIPYANLMGSSMYAMISCRPDLGYSMSTISKFMSNPGKPHWEAANGRHLPLVFPKEHKPLVIRRNTKTSGDPEGTQIFNDPEGTHILWWTHNQRRRSRPNQILKSRRN
PRRMDDADEAERRECSWAAVCKWRTKTHRNPRLT