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Clc11G13830 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G13830
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionsequence-specific DNA binding transcription factors;transcription regulators
Genome locationClcChr11:24690899..24691423
RNA-Seq ExpressionClc11G13830
SyntenyClc11G13830
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651649.1 hypothetical protein Csa_021260, partial [Cucumis sativus]9.9e-4191.51Show/hide
Query:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        MRSIHSFRSRRQAT IS LKP+RRRRIKLLHLPKHTSSST VSATT  RTTPSAAMH+RLRNLQRLVPGHTHET+LNHLFQRTADYI ALQLKLNILKDL
Subjt:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL

Query:  TSFYGL
        TSFYGL
Subjt:  TSFYGL
KAG6598843.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3782.08Show/hide
Query:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        MRSIHSFR RRQAT+ +NLKPTRRRR+KL+HLPK+T+SS+A+SA  A  TTPS AMH+RLRNLQRLVPGH H+TDLNHLFQRTADYI ALQLKLNILKDL
Subjt:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL

Query:  TSFYGL
        TSFYGL
Subjt:  TSFYGL
OMP08066.1 hypothetical protein COLO4_06805 [Corchorus olitorius]6.7e-0536.79Show/hide
Query:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        MRS  S R RR+   ++  +  R R+I L +LP + +     S + + RT    ++ R+L  LQR++P   +E +++ LFQ TADYIF L+ K+++L++L
Subjt:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL

Query:  TSFYGL
        ++FYG+
Subjt:  TSFYGL
TrEMBL top hitse value%identityAlignment
A0A0A0LJ57 Uncharacterized protein4.8e-4191.51Show/hide
Query:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        MRSIHSFRSRRQAT IS LKP+RRRRIKLLHLPKHTSSST VSATT  RTTPSAAMH+RLRNLQRLVPGHTHET+LNHLFQRTADYI ALQLKLNILKDL
Subjt:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL

Query:  TSFYGL
        TSFYGL
Subjt:  TSFYGL
A0A1R3KLV4 Uncharacterized protein3.3e-0536.79Show/hide
Query:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        MRS  S R RR+   ++  +  R R+I L +LP + +     S + + RT    ++ R+L  LQR++P   +E +++ LFQ TADYIF L+ K+++L++L
Subjt:  MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL

Query:  TSFYGL
        ++FYG+
Subjt:  TSFYGL
A0A7N0RGC2 Uncharacterized protein4.7e-0450Show/hide
Query:  TPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDLTSFYGL
        +P+  + RRLR LQR+VPG +H  D+  LF+RTADYI  L+ K+  L++L+S  GL
Subjt:  TPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDLTSFYGL
SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT15.9e-0439.62Show/hide
Query:  ARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        A   P  A+HRR++ L+ LVP       L+ LF++TADYI AL++K+ +++ +
Subjt:  ARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators4.2e-0539.62Show/hide
Query:  ARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
        A   P  A+HRR++ L+ LVP       L+ LF++TADYI AL++K+ +++ +
Subjt:  ARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDL
AT3G58850.1 phy rapidly regulated 27.9e-0443.75Show/hide
Query:  MHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDLTSF
        +  ++  LQ +VPG T E  ++ LF+ TA YI ALQ ++N +K LT+F
Subjt:  MHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDLTSF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCTATTCACTCATTCAGATCAAGAAGACAAGCCACCGCCATTTCCAATCTCAAACCAACAAGGAGAAGAAGGATAAAGCTTCTTCACCTTCCAAAGCACACCTC
CTCCTCCACCGCTGTCTCCGCCACCACCGCTGCCCGAACAACCCCGTCCGCCGCCATGCACAGAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAA
CCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA
mRNA sequenceShow/hide mRNA sequence
CACCTCTTTCTACATACACACGCTTGGGAACTGTATATTATTTGCCTATATAAACACACCCACTTACTTCAACCATTCACAAACAATCCACCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTCATATTAGGAAGCAAAGTTGCGTACGAAAATGAGGTCTATTCACTCATTCAGATCAAGAAGACAAGCCACCGCCATTTCCAATCTCAAACCAACAAGGAG
AAGAAGGATAAAGCTTCTTCACCTTCCAAAGCACACCTCCTCCTCCACCGCTGTCTCCGCCACCACCGCTGCCCGAACAACCCCGTCCGCCGCCATGCACAGAAGGCTGA
GAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTC
AAAGATCTCACTTCTTTCTATGGCCTTTGAATAATATCATTTCCATATTATTATTATTATTATTATTATTATTATTATTATTATT
Protein sequenceShow/hide protein sequence
MRSIHSFRSRRQATAISNLKPTRRRRIKLLHLPKHTSSSTAVSATTAARTTPSAAMHRRLRNLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNILKDLTSFYGL