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Clc11G13890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G13890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr11:24766557..24769152
RNA-Seq ExpressionClc11G13890
SyntenyClc11G13890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW50738.1 putative ribonuclease H protein [Vitis vinifera]1.5e-1640.31Show/hide
Query:  RFLEVRVSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSC
        R  E  +S  GL  GGNPK+I FWDP ++++          FLS  G + LI+  LS IP Y+ S F+   ++   I+K+ RDFLW GV E K  HL+  
Subjt:  RFLEVRVSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSC

Query:  EIVGRPISRGGL-----EPRNLSGYGAFL
        E+V RP   GGL       RN++  G +L
Subjt:  EIVGRPISRGGL-----EPRNLSGYGAFL

TYK19487.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Cucumis melo var. makuwa]1.9e-1946.61Show/hide
Query:  VRVSCFGLAFGGNPKSISFWDPRLKKV-----DWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS
        ++ +  GL  GGN +++S WD   +K+      W  G       S+ G L LIR VLSGIP+YYFS F+  N+V K IKKLMRDFLW+G+D  +G  LVS
Subjt:  VRVSCFGLAFGGNPKSISFWDPRLKKV-----DWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS

Query:  CEIVGRPISRGGLEPRNL
         ++V  P+++GGLE  NL
Subjt:  CEIVGRPISRGGLEPRNL

XP_020420593.1 uncharacterized protein LOC18774736 [Prunus persica]4.0e-1744.92Show/hide
Query:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP
        +S  GL  GGNP++I FWDP ++KV+    +     LS+ G L +I+ VL  IPIYY S F+    V   I+KLMRDFLWEG+D ++  H VS E+VG+ 
Subjt:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP

Query:  ISRGGLEPRNLSGYGAFL
           GGL   +L    A L
Subjt:  ISRGGLEPRNLSGYGAFL

XP_022143310.1 uncharacterized protein LOC111013210 [Momordica charantia]4.0e-1739.5Show/hide
Query:  LEVRVSCFGLAFGGNPKSISFWDP---RLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS
        + + ++  G+  GGNPK+  FWDP   R K   W +       +S+ G L LI+ +LS +P YY S F++   V K+++KLMRDFLW+G+ +++G HLV 
Subjt:  LEVRVSCFGLAFGGNPKSISFWDP---RLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS

Query:  CEIVGRPISRGGLEPRNLS
          IV  P S+G L   ++S
Subjt:  CEIVGRPISRGGLEPRNLS

XP_030497604.1 uncharacterized protein LOC115713262 [Cannabis sativa]3.1e-1748.57Show/hide
Query:  AFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRPISRGGL
        A GG+P+  +FW+P L K       R   FLSR G L LI+ VLS  PIY+ S F+A  +V K+++KLMRDFLWEG +   G HLV+ + V RP   GGL
Subjt:  AFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRPISRGGL

Query:  EPRNL
           NL
Subjt:  EPRNL

TrEMBL top hitse value%identityAlignment
A0A5D3D7E5 NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 isoform X19.3e-2046.61Show/hide
Query:  VRVSCFGLAFGGNPKSISFWDPRLKKV-----DWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS
        ++ +  GL  GGN +++S WD   +K+      W  G       S+ G L LIR VLSGIP+YYFS F+  N+V K IKKLMRDFLW+G+D  +G  LVS
Subjt:  VRVSCFGLAFGGNPKSISFWDPRLKKV-----DWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS

Query:  CEIVGRPISRGGLEPRNL
         ++V  P+++GGLE  NL
Subjt:  CEIVGRPISRGGLEPRNL

A0A6J1CNG6 uncharacterized protein LOC1110132101.9e-1739.5Show/hide
Query:  LEVRVSCFGLAFGGNPKSISFWDP---RLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS
        + + ++  G+  GGNPK+  FWDP   R K   W +       +S+ G L LI+ +LS +P YY S F++   V K+++KLMRDFLW+G+ +++G HLV 
Subjt:  LEVRVSCFGLAFGGNPKSISFWDP---RLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVS

Query:  CEIVGRPISRGGLEPRNLS
          IV  P S+G L   ++S
Subjt:  CEIVGRPISRGGLEPRNLS

M5W647 Reverse transcriptase domain-containing protein (Fragment)1.9e-1744.92Show/hide
Query:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP
        +S  GL  GGNP++I FWDP ++KV+    +     LS+ G L +I+ VL  IPIYY S F+    V   I+KLMRDFLWEG+D ++  H VS E+VG+ 
Subjt:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP

Query:  ISRGGLEPRNLSGYGAFL
           GGL   +L    A L
Subjt:  ISRGGLEPRNLSGYGAFL

M5X2E2 Reverse transcriptase domain-containing protein (Fragment)1.5e-1746.61Show/hide
Query:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP
        +S  GL  GGNP +I FWDP ++KV+    +     LS+ G L +I+ VL  IPIYY S F     V   IKKLMRDFLWEG+D ++  H VS E+VG+ 
Subjt:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP

Query:  ISRGGLEPRNLSGYGAFL
           GGLE  +L    A L
Subjt:  ISRGGLEPRNLSGYGAFL

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)8.7e-1846.61Show/hide
Query:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP
        +S  GL  GGNP++I FWDP ++KV+    +     LS+ G L +I+ VL  IPIYY S F+    V   I+KLMRDFLWEG+D RK  H VS E+VG+ 
Subjt:  VSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVGRP

Query:  ISRGGLEPRNLSGYGAFL
           GGL   +L    A L
Subjt:  ISRGGLEPRNLSGYGAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTCTTGAGGTGCGAGTGAGCTGTTTTGGCCTCGCCTTCGGAGGTAATCCAAAATCAATTTCTTTTTGGGACCCACGGCTGAAGAAGGTAGACTGGCCT
TTTGGAAGAAGACTTATTTTCTTTCTTTCTAGAGTGGGTAGCCTTATTCTGATTAGGTGTGTCCTGAGTGGTATCCCTATTTACTACTTCTCTCCTTTTCAAGCT
CTGAATGCTGTTGGTAAAAGTATCAAAAAGCTTATGCGGGATTTTCTTTGGGAAGGTGTGGATGAACGAAAAGGCCCCCATCTGGTGAGTTGCGAGATAGTTGGT
AGGCCTATCAGTAGAGGAGGATTAGAGCCTCGAAACTTAAGTGGTTATGGTGCTTTCCTCGTGAGCCTAAAGATTCACAGAGCAAGATTATTGGCACAAATGAAT
ATAGGCGTCAATCTGAAGGAGAAGACTCTAACTTGTCCAGAAGAGCACTTGGCTGAAAGGGTGTTAGATGAGTTGGCCTACTTACTTCCCCTTCCCCATGGTCTT
GTGCTGCTTCAAGGCCTACGGATTTACGGGCTTGTTCTCTTGAACTTTGGAAGAAATTTTCCTGCTTTGATTTGGCCTTTTGGCCTCGTTGGAGTGCATTCTCTA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTTCTTGAGGTGCGAGTGAGCTGTTTTGGCCTCGCCTTCGGAGGTAATCCAAAATCAATTTCTTTTTGGGACCCACGGCTGAAGAAGGTAGACTGGCCT
TTTGGAAGAAGACTTATTTTCTTTCTTTCTAGAGTGGGTAGCCTTATTCTGATTAGGTGTGTCCTGAGTGGTATCCCTATTTACTACTTCTCTCCTTTTCAAGCT
CTGAATGCTGTTGGTAAAAGTATCAAAAAGCTTATGCGGGATTTTCTTTGGGAAGGTGTGGATGAACGAAAAGGCCCCCATCTGGTGAGTTGCGAGATAGTTGGT
AGGCCTATCAGTAGAGGAGGATTAGAGCCTCGAAACTTAAGTGGTTATGGTGCTTTCCTCGTGAGCCTAAAGATTCACAGAGCAAGATTATTGGCACAAATGAAT
ATAGGCGTCAATCTGAAGGAGAAGACTCTAACTTGTCCAGAAGAGCACTTGGCTGAAAGGGTGTTAGATGAGTTGGCCTACTTACTTCCCCTTCCCCATGGTCTT
GTGCTGCTTCAAGGCCTACGGATTTACGGGCTTGTTCTCTTGAACTTTGGAAGAAATTTTCCTGCTTTGATTTGGCCTTTTGGCCTCGTTGGAGTGCATTCTCTA
TAA
Protein sequenceShow/hide protein sequence
MRFLEVRVSCFGLAFGGNPKSISFWDPRLKKVDWPFGRRLIFFLSRVGSLILIRCVLSGIPIYYFSPFQALNAVGKSIKKLMRDFLWEGVDERKGPHLVSCEIVG
RPISRGGLEPRNLSGYGAFLVSLKIHRARLLAQMNIGVNLKEKTLTCPEEHLAERVLDELAYLLPLPHGLVLLQGLRIYGLVLLNFGRNFPALIWPFGLVGVHSL