CuGenDBv2

Gene ID	Clc11G14080
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	ClcChr11:24997478..24998017
RNA-Seq Expression	Clc11G14080
Synteny	Clc11G14080
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034101.1 sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa]

7.7e-78

90.06

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Query:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG++  P P+SA  AAR ACSMTVFS++DV+SS+SSSVCSLSSVVVNPFNCSIRRGRRLF+EV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_004147092.1 ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]

1.5e-81

94.48

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Query:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MISIANSIGVI SPAP+SA  AAR ACSMTVFS+ADVKSS+SSSVCSLSS+VVNPFNCSIRRGRRLF+EVPVRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_008445916.1 PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo]

7.7e-78

90.06

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Query:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG++  P P+SA  AAR ACSMTVFS++DV+SS+SSSVCSLSSVVVNPFNCSIRRGRRLF+EV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.2e-73

88.27

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Query:  MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAA
        MI++ANSIGVI +PAP   AAR ACSMTVFSS D KSSYS SV SLSSVVVNPFNCSIRRGRR F+EV V+SDSGT SSA AVSAATTSLSE+ETDEAAA
Subjt:  MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAA

Query:  ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        ARIGARVRVKVPLKVYHVAKLP+A+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_038893043.1 ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida]

7.4e-81

94.48

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Query:  MISIANSIGVISSPAP--ASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MISIANSIGVI +PAP  ASAAAR ACSMTVFS ADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLF+EVPVRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAP--ASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY+
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

7.3e-82

94.48

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Query:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MISIANSIGVI SPAP+SA  AAR ACSMTVFS+ADVKSS+SSSVCSLSS+VVNPFNCSIRRGRRLF+EVPVRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

3.7e-78

90.06

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Query:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG++  P P+SA  AAR ACSMTVFS++DV+SS+SSSVCSLSSVVVNPFNCSIRRGRRLF+EV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

3.7e-78

90.06

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Query:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA
        MI IANSIG++  P P+SA  AAR ACSMTVFS++DV+SS+SSSVCSLSSVVVNPFNCSIRRGRRLF+EV VRSDSGTSSSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVISSPAPASA--AARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

2.8e-73

87.71

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Query:  MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAA
        MI++ANSIGVI +PAP   AAR ACSMTVFSS D KSSYS SV SLSSVVVNPFNCSI RGRR F+EV V+SDSGT SSA AVSAATTSLSE+ETDEAAA
Subjt:  MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAA

Query:  ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        ARIGARVRVKVPLKVYHVAKLP+A+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

1.4e-72

87.15

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Query:  MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAA
        MI++ANSIGVI +PAP   AAR ACSMTVFSS D KSSYSSSV SLSSVVVNPFNCSI RGRR F+EV V+SDSGT SSA AVSAA TSLSE+ETDEAAA
Subjt:  MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAA

Query:  ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        ARIGARVRVKVPL VYHVAKLP+A+LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  ARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

7.9e-17

37.08

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Query:  IANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGR-RLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAR
        +   + V+SS   AS A   A +         +++ S++VC  S++       +  R R  +  EV ++SDS T       S++++   E+E  +    +
Subjt:  IANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGR-RLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPDANL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        +G +V+VK PLKVYHV KLP+  L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Subjt:  IGARVRVKVPLKVYHVAKLPDANL-EGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

1.8e-24

61.05

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Query:  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV
        A+  ++ EE   AAA +IG RVRV  PL+VYHV K PD +++GMEGV+K YV VWKGKRV+AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Subjt:  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

1.1e-29

49.35

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Query:  SMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDAN
        S ++F    + +SY  S C+ S    NP   +IR    + +   V +D+  SSS        TSL  EE DE A  +IGARVRV VPLKVYHV ++P+  
Subjt:  SMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDAN

Query:  LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Subjt:  LEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

7.8e-28

45.76

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Query:  SPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPF----------NCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAR
        SPA A+A  R +    + +SA   ++ +++  +L S +V P           + S R+  R      V   S  S +A A  +++ S SEEE +  A A+
Subjt:  SPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPF----------NCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAAR

Query:  IGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IG+RVRV  PLKVYHV ++P+ +LEGMEG LKDYV VWKGKR+SANLPYK+EF   +EGR  VKFV+HLKE+EFE++
Subjt:  IGARVRVKVPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Sequences

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CDS sequence

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ATGATCAGTATTGCGAACAGTATCGGCGTGATATCATCGCCGGCGCCGGCGTCGGCGGCTGCTCGTCTTGCCTGTTCTATGACGGTATTCTCTAGTGCTGATGTCAAATC
GTCCTATTCCTCGTCCGTTTGTTCTCTATCGTCAGTTGTTGTTAATCCTTTCAACTGCTCGATTAGAAGAGGGAGAAGATTGTTTAACGAGGTTCCAGTTAGATCAGATT
CCGGAACTTCGTCTTCAGCTACTGCTGTTTCGGCGGCGACGACGTCATTGTCGGAGGAAGAGACTGATGAAGCGGCTGCCGCTAGAATTGGAGCCAGAGTTAGGGTTAAG
GTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCGAATCTTGAGGGGATGGAAGGAGTGCTGAAGGACTATGTACGTGTTTGGAAGGGGAAGCGTGTATCTGC
TAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCAGTTGAAGGCCGTCCACCAGTCAAATTCGTCGCTCATCTTAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

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Protein sequence

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MISIANSIGVISSPAPASAAARLACSMTVFSSADVKSSYSSSVCSLSSVVVNPFNCSIRRGRRLFNEVPVRSDSGTSSSATAVSAATTSLSEEETDEAAAARIGARVRVK
VPLKVYHVAKLPDANLEGMEGVLKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Clc11G14080 (gene) of Watermelon (cordophanus) v2 genome