; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc11G14930 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G14930
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionnuclear pore complex protein NUP54
Genome locationClcChr11:25793453..25797909
RNA-Seq ExpressionClc11G14930
SyntenyClc11G14930
Gene Ontology termsGO:0006607 - NLS-bearing protein import into nucleus (biological process)
GO:0006999 - nuclear pore organization (biological process)
GO:0036228 - protein localization to nuclear inner membrane (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR024864 - Nucleoporin Nup54/Nup57/Nup44
IPR025712 - Nucleoporin Nup54, alpha-helical domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573649.1 Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. sororia]2.2e-18691.24Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGN SSTPAFGTPS+SSFATGFGSSLFSTPFSSQPSQ QQQ QQSPLF   +ATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG

Query:  FGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFA  QS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCR+P+M GEAELAE+LALITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ

Query:  LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        L+GSGAELSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEM DD S
Subjt:  LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_004135312.1 nuclear pore complex protein NUP54 [Cucumis sativus]8.6e-19996.66Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSP+FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPF-ATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPF A QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPF-ATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT+T GQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_008446043.1 PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo]1.5e-19897.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFA  QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELS+RVQNLLTIT GQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_023515339.1 nuclear pore complex protein NUP54-like [Cucurbita pepo subsp. pepo]3.7e-18692.53Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNL STPAFGTPSTSSFATGFGSSLFSTPFSSQP QQQQQ QQSPLF Q  ATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG

Query:  FGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFA  QS+PFPNAQL TQMAPVAPLPF LADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSD MWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVIL+D+ERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKL+LITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ

Query:  LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
         K SGAELSRRVQNLL IT GQ NGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAED EMTDD S
Subjt:  LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

XP_038893426.1 nuclear pore complex protein NUP54 [Benincasa hispida]1.7e-19997.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQ QQQLQQSPLFPQ +AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFA  QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KPAGVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDS+RLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLTIT GQANGS AGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAED+EMTDDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

TrEMBL top hitse value%identityAlignment
A0A0A0KPW8 Nup54 domain-containing protein4.1e-19996.66Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSP+FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPF-ATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPF A QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPF-ATQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT+T GQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A1S3BE47 nuclear pore complex protein NUP547.1e-19997.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFA  QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELS+RVQNLLTIT GQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A5A7SSX4 Nuclear pore complex protein NUP547.1e-19997.17Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQ SSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS LFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFA  QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKP GVSDIMWAEAMAKLEGMESADRERL
Subjt:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCR+PV+KGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELS+RVQNLLTIT GQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEM DDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A6J1DDY9 nuclear pore complex protein NUP542.4e-18692.03Show/hide
Query:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        MFGAQPSSS         AFGTPQSTPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F TGFGSSLFSTPFSSQPSQQ QQ QQSPLF Q  AT
Subjt:  MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL
        GFGFQTPFA  QSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+AGNPKYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KLEGMESADRERL
Subjt:  GFGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERL

Query:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR
        WPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQRRLLRVMRIVEALESKGCR+PVMKGEAELAEKLALITR
Subjt:  WPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITR

Query:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        QLKGSGAELSRRVQNLLT T GQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEMTDDAS
Subjt:  QLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

A0A6J1G105 nuclear pore complex protein NUP545.8e-18590.98Show/hide
Query:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG
        FG   S+ AFGTPQSTPAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+SSFATGFGSSLFSTPFSSQPSQQQQ  QQSPLF   +ATG
Subjt:  FGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATG

Query:  FGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
        FGFQTPFA  QS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW
Subjt:  FGFQTPFAT-QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLW

Query:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ
        PQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCR+P+M GEAELAE+LALITRQ
Subjt:  PQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQ

Query:  LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS
        L+GSGAELSRRV+NLLTIT GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRDVRDMEIIMAEDKEM DD S
Subjt:  LKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS

SwissProt top hitse value%identityAlignment
P70582 Nuclear pore complex protein Nup542.5e-0726.96Show/hide
Query:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE
        PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +   ++  LQ++    T+  + + K+K   L  R L+V+   E
Subjt:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE

Query:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
             G    +   E +L  +L  I  +L  +  +   R+  L++    Q N  GA  S   +    I    L ++++ L+QQ E ++ L +++K D+ D
Subjt:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEII
        ++++
Subjt:  MEII

Q7Z3B4 Nucleoporin p549.4e-0726.47Show/hide
Query:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE
        PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +   ++  LQ++    ++  + + K+K   L  R L+V+   E
Subjt:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE

Query:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
             G    +   E +L  +L  I  +L  +  +   R+  L++    Q N  GA  S   +    I    L ++++ L+QQ E ++ L +++K D+ D
Subjt:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEII
        ++++
Subjt:  MEII

Q8BTS4 Nuclear pore complex protein Nup542.5e-0726.96Show/hide
Query:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE
        PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +   ++  LQ++    T+  + + K+K   L  R L+V+   E
Subjt:  PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE

Query:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
             G    +   E +L  +L  I  +L  +  +   R+  L++    Q N  GA  S   +    I    L ++++ L+QQ E ++ L +++K D+ D
Subjt:  ALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEII
        ++++
Subjt:  MEII

Q8GYF7 Nuclear pore complex protein NUP541.9e-14071.69Show/hide
Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPF-----A
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF      
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPF-----A

Query:  TQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLEGM+S +RERLWPQLVQGFKD
Subjt:  TQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD

Query:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS
        LSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELS
Subjt:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS

Query:  RRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA
        RRVQ+L TI+  QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED EM  D+
Subjt:  RRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA

Q9VDV3 Nuclear pore complex protein Nup589.1e-1040.88Show/hide
Query:  FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT
        FGA  +++ AFGT  +TPAFG P +T AFG PA+TPAFG  +A+PAFG  ++TPAFG P+ +S    FG+   +T F +  S Q            + A 
Subjt:  FGAQPSSS-AFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSAT

Query:  GFGFQTPFATQSTPFPNA--QLTTQMAPVAPLPFSLA
         F F TP  +  T  P A    TT     A +P SL+
Subjt:  GFGFQTPFATQSTPFPNA--QLTTQMAPVAPLPFSLA

Arabidopsis top hitse value%identityAlignment
AT1G24310.1 unknown protein1.3e-14171.69Show/hide
Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPF-----A
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S LF Q  ++ FGFQ+PF      
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPLFPQSSATGFGFQTPF-----A

Query:  TQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLEGM+S +RERLWPQLVQGFKD
Subjt:  TQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKD

Query:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS
        LSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELS
Subjt:  LSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELS

Query:  RRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA
        RRVQ+L TI+  QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RDMEI++AED EM  D+
Subjt:  RRVQNLLTITHGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCGGCGTCCACTCCTGC
CTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCATCGTTTGCCACCGGCTTCGGCTCGTCTCTCTTCT
CCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAGACTCCGTTTGCGACT
CAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAA
AGACGACGCAGGAAACCCTAAGTATGCTTTTAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGG
CAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTC
ATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCCGATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGA
GCAAGGGCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGCCGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGT
TGGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAACTTGCTTACAATTACTCATGGTCAAGCAAATGGCTCCGGTGCTGGTAAC
TCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAA
GCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATGCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGAGCTCAACCATCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACTCCACAATCAACTCCGGCATTTGGCACGCCGGCGTCCACTCCTGC
CTTCGGAACTCCATCGGCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTTGGAACTCCATCTACGTCATCGTTTGCCACCGGCTTCGGCTCGTCTCTCTTCT
CCACTCCATTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGTTGCAGCAATCCCCGCTGTTTCCGCAATCATCCGCCACAGGATTCGGTTTCCAGACTCCGTTTGCGACT
CAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAA
AGACGACGCAGGAAACCCTAAGTATGCTTTTAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGG
CAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGACAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTC
ATTCTCTCTGATTCTGAGAGACTTCGGATGACTCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCCGATACTCTACCTTGGGTTCAAAGATTGAAACAGAAGGA
GCAAGGGCTTCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCACTGGAAAGTAAGGGTTGCCGAATGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGT
TGGCTTTGATAACGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAACTTGCTTACAATTACTCATGGTCAAGCAAATGGCTCCGGTGCTGGTAAC
TCAATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAACAGACTGAGGCCATTGCTAGACTCGGAAATGTTTTAAA
GCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATGCAAGTTAA
Protein sequenceShow/hide protein sequence
MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPLFPQSSATGFGFQTPFAT
QSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEV
ILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRMPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTITHGQANGSGAGN
SIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDDAS