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Clc11G15090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G15090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr11:25999465..25999770
RNA-Seq ExpressionClc11G15090
SyntenyClc11G15090
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591653.1 hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4287.25Show/hide
Query:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRL-GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL
        MGIKWRNSRSQSIRLGQSC S N+QESKRL GWQILW+KFKKEK +IFSCSSVELRSSYNPNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRL-GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL

Query:  LD
        LD
Subjt:  LD

KGN60340.2 hypothetical protein Csa_000895 [Cucumis sativus]1.1e-4491.09Show/hide
Query:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLL
        MG+KWRNSRSQSIRLGQSCVSSN+QESKRLGWQILWRK KKEK K+FSCSSVELRSSYNPNAY LNFDEENW S+PDNL RSFSARFADPSIVSRNLRLL
Subjt:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLL

Query:  D
        D
Subjt:  D

ONI33933.1 hypothetical protein PRUPE_1G454200 [Prunus persica]1.2e-1655.24Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKE-KEKIFSCSSVELR-SSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNL
        MGIK W NSRSQS+RLGQ  + SN  +  R GWQ  W+KFK + K+K FS S+V  + +SY+P  Y  NFD      +PDNL RSFSARFADPS++  N 
Subjt:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKE-KEKIFSCSSVELR-SSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNL

Query:  R-LLD
        R LLD
Subjt:  R-LLD

XP_022936244.1 uncharacterized protein LOC111442916 [Cucurbita moschata]3.5e-4388.24Show/hide
Query:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRL-GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL
        MGIKWRNSRSQSIRLGQSC SSN+QESKRL GWQILW+KFKKEK +IFSCSSVELRSSYNPNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRL-GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL

Query:  LD
        LD
Subjt:  LD

XP_023536137.1 uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]3.5e-4388.24Show/hide
Query:  MGIKWRNSRSQSIRLGQSCVSSNQQESKR-LGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL
        MGIKWRNSRSQSIRLGQSC SSN+QESKR LGWQILW+KFKKEK +IFSCSSVELRSSYNPNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCVSSNQQESKR-LGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL

Query:  LD
        LD
Subjt:  LD

TrEMBL top hitse value%identityAlignment
A0A0A0LJH9 Uncharacterized protein5.2e-4591.09Show/hide
Query:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLL
        MG+KWRNSRSQSIRLGQSCVSSN+QESKRLGWQILWRK KKEK K+FSCSSVELRSSYNPNAY LNFDEENW S+PDNL RSFSARFADPSIVSRNLRLL
Subjt:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLL

Query:  D
        D
Subjt:  D

A0A251RD41 Uncharacterized protein6.0e-1755.24Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKE-KEKIFSCSSVELR-SSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNL
        MGIK W NSRSQS+RLGQ  + SN  +  R GWQ  W+KFK + K+K FS S+V  + +SY+P  Y  NFD      +PDNL RSFSARFADPS++  N 
Subjt:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKE-KEKIFSCSSVELR-SSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNL

Query:  R-LLD
        R LLD
Subjt:  R-LLD

A0A5N5I1S5 Pentatricopeptide repeat-containing protein1.3e-1650.48Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSV--ELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRN
        MGI+ WRNSRSQSIRLG +    +     + GWQ  W++FK E++KIF  S+V  + ++SY+P+ Y  NFD+     +PDNL RSFSARFADPS ++  N
Subjt:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSV--ELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRN

Query:  LRLLD
          LLD
Subjt:  LRLLD

A0A6J1F7R9 uncharacterized protein LOC1114429161.7e-4388.24Show/hide
Query:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRL-GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL
        MGIKWRNSRSQSIRLGQSC SSN+QESKRL GWQILW+KFKKEK +IFSCSSVELRSSYNPNAY+LNF++ENWGSDPD+LCRSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCVSSNQQESKRL-GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRL

Query:  LD
        LD
Subjt:  LD

A0A6J5TRF8 Uncharacterized protein1.0e-1655.24Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKE-KEKIFSCSSVELR-SSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRN
        MGIK W NSRSQSIRLGQ  +SSN  +  + GWQ  W+KFK + K+K FS S+V  + +SY+P  Y  NFD      +PDNL R FSARFADPS I+ +N
Subjt:  MGIK-WRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKE-KEKIFSCSSVELR-SSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPS-IVSRN

Query:  LRLLD
          LLD
Subjt:  LRLLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25735.1 unknown protein6.8e-0537.63Show/hide
Query:  RLGQSCVSSNQ-QESKRL--GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDE-ENW--GSDPDNLCRSFSARFADPSIVSRNLRLL
        R  +SC    Q Q  +RL   W++L  K K    +  S   V    +Y P  Y LNFD+   W    +P+NL RSFS RFADP+ +     LL
Subjt:  RLGQSCVSSNQ-QESKRL--GWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDE-ENW--GSDPDNLCRSFSARFADPSIVSRNLRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATCAAATGGCGCAATTCACGTAGTCAAAGCATCAGATTGGGTCAGAGCTGTGTTTCTTCGAATCAGCAAGAAAGCAAACGACTCGGATGGCAGATTTTGTGGAG
AAAATTCAAGAAGGAGAAGGAAAAAATCTTCAGTTGTTCTTCAGTTGAGTTACGTTCTTCTTATAATCCAAATGCTTATCAGTTGAATTTTGATGAAGAAAATTGGGGCT
CTGATCCTGATAATCTCTGCCGATCTTTCTCTGCTCGTTTTGCTGATCCATCAATTGTTTCAAGGAACTTGAGATTGTTGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATCAAATGGCGCAATTCACGTAGTCAAAGCATCAGATTGGGTCAGAGCTGTGTTTCTTCGAATCAGCAAGAAAGCAAACGACTCGGATGGCAGATTTTGTGGAG
AAAATTCAAGAAGGAGAAGGAAAAAATCTTCAGTTGTTCTTCAGTTGAGTTACGTTCTTCTTATAATCCAAATGCTTATCAGTTGAATTTTGATGAAGAAAATTGGGGCT
CTGATCCTGATAATCTCTGCCGATCTTTCTCTGCTCGTTTTGCTGATCCATCAATTGTTTCAAGGAACTTGAGATTGTTGGATTAA
Protein sequenceShow/hide protein sequence
MGIKWRNSRSQSIRLGQSCVSSNQQESKRLGWQILWRKFKKEKEKIFSCSSVELRSSYNPNAYQLNFDEENWGSDPDNLCRSFSARFADPSIVSRNLRLLD